PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023820.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 373aa MW: 41373.3 Da PI: 6.4447

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023820.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.7	8.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ g+W+++++ g+ R++k+c++rw +yl PCP023820.1 14 RGLWSPEEDEKLINYITTNSHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	48.3	2.3e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ PCP023820.1 67 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TNSHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLISHE 120 VIPAFASFSN DHIHNPSGHG SEEGFFTLNT NPNLCSQPQD QLYLPIVPSP VPSLGLNYHG 180 DFNNILKLDQ TNYASNFVDH FLPPFQLPSN NASSYESSSW SSGYQPQHQF DPNIQQVQNF 240 SINEAAAAQY NNIGNELMVP ISMASSEPVA YENPFILPTV PKFCEIIDGN VCRMPILYPS 300 DLQELDSLAK LSCFTSGHGS HPQDLQFPSN QLECIDAIMS LVPSSSSSSS PSSASPSLLP 360 LSSSQFDANF NAH

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TNSHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLISHE  120
VIPAFASFSN DHIHNPSGHG SEEGFFTLNT NPNLCSQPQD QLYLPIVPSP VPSLGLNYHG  180
DFNNILKLDQ TNYASNFVDH FLPPFQLPSN NASSYESSSW SSGYQPQHQF DPNIQQVQNF  240
SINEAAAAQY NNIGNELMVP ISMASSEPVA YENPFILPTV PKFCEIIDGN VCRMPILYPS  300
DLQELDSLAK LSCFTSGHGS HPQDLQFPSN QLECIDAIMS LVPSSSSSSS PSSASPSLLP  360
LSSSQFDANF NAH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	4e-79	MYB family protein