PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024113.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 304aa MW: 33173.3 Da PI: 8.2399

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024113.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.6	1.2e-44	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp ++p++fanvhk+FGasnv k+l++l+ ++r+da++sl+yeAear+rdPvyG+vg+i+ lqqql+q++a+l +k PCP024113.1 13 PCAACKFLRRKCTPECVFAPYFPPDNPQRFANVHKVFGASNVAKILNELSASQRDDAVNSLAYEAEARLRDPVYGCVGLISLLQQQLKQVQADLINAK 110 7********************************************************************************************99888 PP DUF260 99 ee 100 +e PCP024113.1 111 KE 112 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MSSSSMSSSS NSPCAACKFL RRKCTPECVF APYFPPDNPQ RFANVHKVFG ASNVAKILNE 60 LSASQRDDAV NSLAYEAEAR LRDPVYGCVG LISLLQQQLK QVQADLINAK KELATYIGPQ 120 AMLSILQPPT YMAQQLQRNS SSSAGPPYSM SPMMGIPTAA ASGQLMVRDP QQQQQHQQIF 180 EAQQLAAAVA AREQQEMFRS FDQSKQAMQQ QAQDHLSGFT QMAGAVGNAV LPSLALGFDS 240 GPYHQIQPQH PHHNHRHQLQ LQAQLLLQTQ QPQGHHQAQQ SQQPQLQAKP VPGEEGGGRS 300 VGPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-68	LBD family protein