PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024253.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 553aa MW: 59916.6 Da PI: 8.9707

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024253.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.8	5.6e-11	128	152	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+C yG+rC+++H++ PCP024253.1 128 VPNCVYYMRTGFCGYGGRCRYNHPR 152 689********************96 PP
2	zf-CCCH	35.6	1.6e-11	173	197	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++t tCk+G++CkF+H++ PCP024253.1 173 EPICQYYLKTATCKFGASCKFHHPK 197 799********************96 PP
3	zf-CCCH	36.1	1.1e-11	218	243	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ PCP024253.1 218 GENECSYYLKTGQCKFGITCKFHHPQ 243 6789********************97 PP
4	zf-CCCH	35.8	1.3e-11	377	400	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++++tG CkyG++C+++H++ PCP024253.1 377 LECQYYLKTGDCKYGASCRYHHPR 400 58********************96 PP
5	zf-CCCH	36	1.1e-11	421	445	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++G+Ck+G++CkF H+ PCP024253.1 421 GVQPCTFYLQNGQCKFGSTCKFDHP 445 6789********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MVYIGGSDEE ERVEVKSMAL GYEKAKPLHN FNLSWVNWRS SAQRIENSPA VMTRVGMVYG 60 FWDFRDAVAA GVQKPNTRRF VMDLYGRSPA RNGSNQEWSP AAGETGLEEQ MWHLGLTSSE 120 SYPERPAVPN CVYYMRTGFC GYGGRCRYNH PRDRAAVVAA VRATGDYPER AGEPICQYYL 180 KTATCKFGAS CKFHHPKHGA GSLSRAPLNI YGYPLRPGEN ECSYYLKTGQ CKFGITCKFH 240 HPQPAGTAIP ASAPQFYPPV QSPSVALAEQ YGGASTSLRV ARPPLLPGSY VQGAYGPVLI 300 QPGVVPIQGW SPYSAPLSPV LSPGAQHTVG ATSLYGVTQL SSPTHGLARP YTSIPSSIGP 360 SSSNPSEQVF PERPGELECQ YYLKTGDCKY GASCRYHHPR DRTVPRITCL LSPMGLPLRP 420 GVQPCTFYLQ NGQCKFGSTC KFDHPVQNMR YNPSVSSLVD MPVAPYPVGS LLATLAPSSS 480 SSDLRPELLS ASKMDTYSAR VPSSGNASSS SVGLIFSQSG SVSLSDVQLS TQTSSPLSNS 540 RSTRPVGELR RSS

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MVYIGGSDEE ERVEVKSMAL GYEKAKPLHN FNLSWVNWRS SAQRIENSPA VMTRVGMVYG  60
FWDFRDAVAA GVQKPNTRRF VMDLYGRSPA RNGSNQEWSP AAGETGLEEQ MWHLGLTSSE  120
SYPERPAVPN CVYYMRTGFC GYGGRCRYNH PRDRAAVVAA VRATGDYPER AGEPICQYYL  180
KTATCKFGAS CKFHHPKHGA GSLSRAPLNI YGYPLRPGEN ECSYYLKTGQ CKFGITCKFH  240
HPQPAGTAIP ASAPQFYPPV QSPSVALAEQ YGGASTSLRV ARPPLLPGSY VQGAYGPVLI  300
QPGVVPIQGW SPYSAPLSPV LSPGAQHTVG ATSLYGVTQL SSPTHGLARP YTSIPSSIGP  360
SSSNPSEQVF PERPGELECQ YYLKTGDCKY GASCRYHHPR DRTVPRITCL LSPMGLPLRP  420
GVQPCTFYLQ NGQCKFGSTC KFDHPVQNMR YNPSVSSLVD MPVAPYPVGS LLATLAPSSS  480
SSDLRPELLS ASKMDTYSAR VPSSGNASSS SVGLIFSQSG SVSLSDVQLS TQTSSPLSNS  540
RSTRPVGELR RSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein