PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP024301.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 531aa    MW: 60204.8 Da    PI: 4.4169
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP024301.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS121.79.2e-381615282374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +lL ++ e ++ g+ el   ++  l e ++p g++++Rla+ + ++     ++      + l+  ++   + ++  aa++lf++++P+ +++h +aN
  PCP024301.1 161 HHLLKAFSESMEMGQRELELVIMRCLAEKVNPLGQSLERLAFNLCQGFVDNQHG------DYLK--QE---SCKNFEAAFNLFYQIFPFGRLAHYAAN 247
                  57788888999999999999999************************9988888......2222..22...356777899****************** PP

         GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                   aIlea+ ++ e+vH++ fdi++G+Q   L++a a+R+++   l++T+++   ++       + + eet+++L++  +++g++++ + +   ++edl 
  PCP024301.1 248 TAILEAIPEDvETVHVVEFDIGEGVQLSQLIEAVAKRNKK---LKVTAIKWDVEEsdevapPQWRFEETKKQLQHHGRSFGLNLKVEEI---AIEDL- 338
                  *******9998**************************876...******976555668899999***********************99...44455. PP

         GRAS 191 leeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleaklp 276
                  ++e++  +     +E la n+++ l ++   +  ++    e+L+l k+l ++    +v++ +    +++ n++sF   f   + +y al++sle+++p
  PCP024301.1 339 VSEIKKANkrggmREFLAFNSMVGLPHMR--RRRSRGLVMEFLRLAKDLLANsargIVTFGDGYacTKRgNDSSFRSFFDANVVHYKALLESLESTFP 434
                  4444333334566*************997..333444568*********7755556899999775334489*************************** PP

         GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSa 372
                  ++  e+r+++E +++++ +++     + + +er+       +    +G+++ ++s ++ ++ak ++   +s g rv  e+ +++ l W++ pLv v  
  PCP024301.1 435 SHLgEARMVMELMFVAPYVSSQAWLDKWN-EERE-----CGNLQPLFGLESRRVSREMLMEAKDIVGADSSYGVRVGgENGNEMALEWNSIPLVRVET 526
                  999899*******9999999988888877.3333.....34556789*****************************966677888***********99 PP

         GRAS 373 Wr 374
                  W+
  PCP024301.1 527 WT 528
                  95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    
MNFQSLWPYL NVTNSLVDTN EYNDQMVSTE FSSIFMASDE FSESSPFPFS TIFSVECEQF  60
ADCDNLLQVT SMAAEEFPMD LGGFEPNFFI DQYENMYASC LEGSEGSNTL PSQQFSVEGN  120
DVWSPNSFVT SEASSMDVTS VQQSLTLPRD DMEIDNEVSI HHLLKAFSES MEMGQRELEL  180
VIMRCLAEKV NPLGQSLERL AFNLCQGFVD NQHGDYLKQE SCKNFEAAFN LFYQIFPFGR  240
LAHYAANTAI LEAIPEDVET VHVVEFDIGE GVQLSQLIEA VAKRNKKLKV TAIKWDVEES  300
DEVAPPQWRF EETKKQLQHH GRSFGLNLKV EEIAIEDLVS EIKKANKRGG MREFLAFNSM  360
VGLPHMRRRR SRGLVMEFLR LAKDLLANSA RGIVTFGDGY ACTKRGNDSS FRSFFDANVV  420
HYKALLESLE STFPSHLGEA RMVMELMFVA PYVSSQAWLD KWNEERECGN LQPLFGLESR  480
RVSREMLMEA KDIVGADSSY GVRVGGENGN EMALEWNSIP LVRVETWTNR S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-17GRAS family protein