PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP024342.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19603.7 Da    PI: 10.693
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP024342.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.6e-221053245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  +e++s rqvtfskRr+g++KKA+EL +LC+ae+av++fs+ gk
  PCP024342.1 10 VVEDSSSRQVTFSKRRTGLFKKANELATLCGAEIAVLVFSPGGK 53
                 689**************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MGRRKIEMKV VEDSSSRQVT FSKRRTGLFK KANELATLCG AEIAVLVFSP GGKPFSFGHP  60
NVESIADRFL NQECPKSKFR VSKNDEKAGR LNQQLEDMES QLEAEKKRGI VLDKAVLKAM  120
GLPLKRKPPS FRELSRADLR KMKASLEALR ENVKEKASEV EASSSLLLLA NGRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-39M-type_MADS family protein