PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024569.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 920aa MW: 100715 Da PI: 4.6961

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024569.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	64.9	2e-20	3	73	30	100
DUF260 30 fanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 f+n+h+l+G+sn++k+lk++++e+ e+am+s++ye+++ra+ v G++g+i++l+ ql+q+ +el +++++ PCP024569.1 3 FQNAHRLYGVSNIMKILKKVHPEQEEEAMTSIIYESNMRAKFSVTGCMGIINQLNFQLQQALEELRYVRTH 73 9****************************************************************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence
MMFQNAHRLY GVSNIMKILK KVHPEQEEEA MTSIIYESNM RAKFSVTGCM GIINQLNFQL 60 QQALEELRYV RTHLAICKDQ CQYRLPSSSP HYSSPSPQLQ LGIPTNTDAA TLTLYQQHQY 120 PYQYASGASG ASGGMSWVGN EYLANGLNGV YIDDNDNMVK TLRVQHPYYN DNNVEQLMAV 180 QSSLVSSQAF PVHQEMDVPH DYDDIPFDTI ADDRQSYIES KEGCESSAES SFKATTQSIE 240 HVSQNDLKSA AACFSLTRSP FTPKTPLNFC RYNGSVCCDS AEDLLLQNLF KAMNVSDLGC 300 ASLVKSILCS KCDQFSAELY RIESAPRHVP LLCNSTQHQP GGVDFCSKVW DECQNVALLN 360 SPFSLQVGGG TPSNSTSKLS DTWQSTTAFC NAFGGSSNDE SFCFDGGPVS LNSTEIPSPP 420 SGMCLEKIGN GSYLNMVAHP DGSNRVFLSD QAGKVWLATV PEEGSGETLV IDEANPFLDI 480 TDQVYSDTEF GMMGLAFHPN YVQNGRFFAS FNCDKAKWPQ CSGRCSCNSD VGCDPSKLEP 540 DNGGQPCQYH SIIAEFTANA TTPQPSSFTS VKPLEVRRIF TMGLPFTTHH AGQILFGPKD 600 GYLYFMMGDG GSIGDPYNFA QNKKSLLGKS MRLDIDNLPS AKEIADLGLW GNYSVPGDNP 660 FTEDEELQPE IWALGFRNPW RCSFDLERPS YFLCADVGQD KYEEVDLVTK GGNYGWRVYE 720 GPFRYNPPKS PGGNTSASSI NPIFPVMGYT HSEVNKAGGS TSITGGYFYR STTDPCMYGR 780 YVYADLYASG VWTALETPEG SGNFTTAKIA VGCALDSPIQ CVAEAGSSVA ALGFIFSFGQ 840 DNRKDIFMLA SSGLYRVAKP SRCNYTCSKE NVASSSPPKS VPSPPPSASS TRQLNNPLTL 900 ELLIIFCTLL LPSEFSLVNL

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence

MMFQNAHRLY GVSNIMKILK KVHPEQEEEA MTSIIYESNM RAKFSVTGCM GIINQLNFQL  60
QQALEELRYV RTHLAICKDQ CQYRLPSSSP HYSSPSPQLQ LGIPTNTDAA TLTLYQQHQY  120
PYQYASGASG ASGGMSWVGN EYLANGLNGV YIDDNDNMVK TLRVQHPYYN DNNVEQLMAV  180
QSSLVSSQAF PVHQEMDVPH DYDDIPFDTI ADDRQSYIES KEGCESSAES SFKATTQSIE  240
HVSQNDLKSA AACFSLTRSP FTPKTPLNFC RYNGSVCCDS AEDLLLQNLF KAMNVSDLGC  300
ASLVKSILCS KCDQFSAELY RIESAPRHVP LLCNSTQHQP GGVDFCSKVW DECQNVALLN  360
SPFSLQVGGG TPSNSTSKLS DTWQSTTAFC NAFGGSSNDE SFCFDGGPVS LNSTEIPSPP  420
SGMCLEKIGN GSYLNMVAHP DGSNRVFLSD QAGKVWLATV PEEGSGETLV IDEANPFLDI  480
TDQVYSDTEF GMMGLAFHPN YVQNGRFFAS FNCDKAKWPQ CSGRCSCNSD VGCDPSKLEP  540
DNGGQPCQYH SIIAEFTANA TTPQPSSFTS VKPLEVRRIF TMGLPFTTHH AGQILFGPKD  600
GYLYFMMGDG GSIGDPYNFA QNKKSLLGKS MRLDIDNLPS AKEIADLGLW GNYSVPGDNP  660
FTEDEELQPE IWALGFRNPW RCSFDLERPS YFLCADVGQD KYEEVDLVTK GGNYGWRVYE  720
GPFRYNPPKS PGGNTSASSI NPIFPVMGYT HSEVNKAGGS TSITGGYFYR STTDPCMYGR  780
YVYADLYASG VWTALETPEG SGNFTTAKIA VGCALDSPIQ CVAEAGSSVA ALGFIFSFGQ  840
DNRKDIFMLA SSGLYRVAKP SRCNYTCSKE NVASSSPPKS VPSPPPSASS TRQLNNPLTL  900
ELLIIFCTLL LPSEFSLVNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-15	LBD family protein