PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024639.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 468aa MW: 51998.6 Da PI: 6.8979

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024639.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	8e-13	323	369	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq PCP024639.1 323 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 369 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MILINFICRS GGPSLSLILC QLVNGSNWNY AIFWQAVSSK SGGSALGWGD GHCRDTKDGG 60 AGDANSSRDS SLEAVQNKEE VKKRVVEKLH ACFGGLHADN YARRLDGVSD VEMFYLTSMC 120 YAFQLDSISH CGPAESYNSR KSIWVSDAGS CLHHYQSRSF LARLAGFRTL VFVPMKSGVV 180 ELGSVKSTSE EQSYVDMVRS AFGESSPIQP KASPMIFGRE LSLGGPKSQS VNISFTPKVE 240 EDFACPPESF ELQSVGTSNG FRSEGGEVKL FPQMNQLMVD GFNTQTGVSS SELLKDESST 300 QVDEQKPRKR GRKPSNGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD 360 AITYITDLQM KIRVIETEKQ MVNKGRQLPV PEIDFQERHE DAVVRMNFPL DSHPVSDVIR 420 TLREHKIVPQ ESNVSITDND KVIHTFSIQT QGGDDEKLKE KLVAFPSK

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MILINFICRS GGPSLSLILC QLVNGSNWNY AIFWQAVSSK SGGSALGWGD GHCRDTKDGG  60
AGDANSSRDS SLEAVQNKEE VKKRVVEKLH ACFGGLHADN YARRLDGVSD VEMFYLTSMC  120
YAFQLDSISH CGPAESYNSR KSIWVSDAGS CLHHYQSRSF LARLAGFRTL VFVPMKSGVV  180
ELGSVKSTSE EQSYVDMVRS AFGESSPIQP KASPMIFGRE LSLGGPKSQS VNISFTPKVE  240
EDFACPPESF ELQSVGTSNG FRSEGGEVKL FPQMNQLMVD GFNTQTGVSS SELLKDESST  300
QVDEQKPRKR GRKPSNGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD  360
AITYITDLQM KIRVIETEKQ MVNKGRQLPV PEIDFQERHE DAVVRMNFPL DSHPVSDVIR  420
TLREHKIVPQ ESNVSITDND KVIHTFSIQT QGGDDEKLKE KLVAFPSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-145	bHLH family protein