PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024920.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 455aa MW: 49943.2 Da PI: 6.3555

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024920.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.5e-06	345	383	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L PCP024920.1 345 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 383 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MADEFQTPGN WWDSSSRTRF ETGASPSSSS LNTLGSFGWQ PDIVDIKARS SMDSGSVSGT 60 SSMVFHDTHK LQEGTDSAGG GSDPNLHMMG LGLSSQATDW NQALFRGEKE TSFRSILQEN 120 MNSNTANFQQ ESDQQLQWRD KLFAGGCGDS SNNEFKQMTR GFSLDQTQFS PRYSSGESTV 180 TCQGLPSGFQ MDSASAALYG SPSTILQGLL GPHHDNQPQQ PSSAIINFPY QGNYGINNSS 240 ELLPSWSKVP QFLRTSPPKQ PPQSHLQFSN DAPFWNAPHE AAMKDVRPSF FPSLQPQFPT 300 ARFDEKPKNI SEVQESGAVG KKSGSEAASK RPRNETSSPL PAFKVRKEKM GDRITALQQL 360 VSPFGKTDTA SVLSEAIEYI KFLHEQVNVL STPYMKSGAV IQHQQQNSDK VKDPDGPKQD 420 LRSRGLCLVP VSSTFPVTHE TTVDFWTPTF GGTFR

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MADEFQTPGN WWDSSSRTRF ETGASPSSSS LNTLGSFGWQ PDIVDIKARS SMDSGSVSGT  60
SSMVFHDTHK LQEGTDSAGG GSDPNLHMMG LGLSSQATDW NQALFRGEKE TSFRSILQEN  120
MNSNTANFQQ ESDQQLQWRD KLFAGGCGDS SNNEFKQMTR GFSLDQTQFS PRYSSGESTV  180
TCQGLPSGFQ MDSASAALYG SPSTILQGLL GPHHDNQPQQ PSSAIINFPY QGNYGINNSS  240
ELLPSWSKVP QFLRTSPPKQ PPQSHLQFSN DAPFWNAPHE AAMKDVRPSF FPSLQPQFPT  300
ARFDEKPKNI SEVQESGAVG KKSGSEAASK RPRNETSSPL PAFKVRKEKM GDRITALQQL  360
VSPFGKTDTA SVLSEAIEYI KFLHEQVNVL STPYMKSGAV IQHQQQNSDK VKDPDGPKQD  420
LRSRGLCLVP VSSTFPVTHE TTVDFWTPTF GGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	4e-84	bHLH family protein