PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024959.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YC

Protein Properties

Length: 252aa MW: 28161.7 Da PI: 6.3689

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024959.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.2	3.1e-55	99	202	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw +q i++++dfknh+lPlarikki+kadedv+misaeaPv++++ace+filelt+rsw+h+eenkrrtl+k+diaaa+trtdifdflvdi PCP024959.1 99 QLQKFWGEQhkeIDQTNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTMRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 196 89**9998889********************************************************************************* PP NF-YC 96 vprdel 101 vpr++l PCP024959.1 197 VPREDL 202 *987 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MFSGVGVAVA VESDLVRGTK GTFLPTYANM DQQGHGHPAT MGVGGTAAQA SYGVNPYGSV 60 GMMQSPTQPA GPAASSQLAQ HQLAYQHIHQ QQQQQLQQQL QKFWGEQHKE IDQTNDFKNH 120 SLPLARIKKI MKADEDVRMI SAEAPVIFAR ACEMFILELT MRSWNHTEEN KRRTLQKNDI 180 AAAITRTDIF DFLVDIVPRE DLKDEHASQV GAPAMIVGRP VMDQNLYGQQ THPYIAQPTW 240 PQQQQHPHDD LE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	178	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	5e-71	NF-YC family protein