PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP025042.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 557aa MW: 61060.1 Da PI: 7.2515

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP025042.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.8	1.4e-16	354	400	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq PCP025042.1 354 VHNLSERKRRDRINEKMKALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 400 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MNSCIPEWNF ESDLPLTNQK KSIGPDHELV ELLWRNGQVV LNSQTHRKPS FNPNDQSRQV 60 QKHDQQSIRS GGLYGNSSNP IQDDDTVSLI HYPLEDSFDK EFCSHFFSEF PSCDPIELDK 120 PIKQFEGEKV VKFDASDTAR LVSNSPRPNG KSSAGVEYAA NPMPPPRYQY INSTDQQNQN 180 QGGVGKIVNF SQFATPGRVS AGSSRGQLGG KESGNLAQAE VRECSVMTVG SSYVGSNQVL 240 NDLDVSRASS NFDGTTGLSA GHFYDNVHKI MPQSETGKTD TLDPTLTSSS GGSGSSFGRG 300 GNQSNVVNSN KRKGREAADS ECQSEAAELE SASAARSKSA HRSGSTRRSR AAEVHNLSER 360 KRRDRINEKM KALQELIPHS NKTDKASMLD EAIEYLKSLQ MQLQVMWMGS GMAPMMFPGV 420 QHYISRMGMG MGMGMGPPAL PSMQNPMHLP RHPLVDQCMN VAPAANQTVM CQPPVLNPID 480 YHNQMQNPSF QEQYARLMNF HHMQTMSQPM NMFRFGSQPL QQNKMMAPNG FSSGPFGGGA 540 ATNDPSSGKM SKSLEST

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MNSCIPEWNF ESDLPLTNQK KSIGPDHELV ELLWRNGQVV LNSQTHRKPS FNPNDQSRQV  60
QKHDQQSIRS GGLYGNSSNP IQDDDTVSLI HYPLEDSFDK EFCSHFFSEF PSCDPIELDK  120
PIKQFEGEKV VKFDASDTAR LVSNSPRPNG KSSAGVEYAA NPMPPPRYQY INSTDQQNQN  180
QGGVGKIVNF SQFATPGRVS AGSSRGQLGG KESGNLAQAE VRECSVMTVG SSYVGSNQVL  240
NDLDVSRASS NFDGTTGLSA GHFYDNVHKI MPQSETGKTD TLDPTLTSSS GGSGSSFGRG  300
GNQSNVVNSN KRKGREAADS ECQSEAAELE SASAARSKSA HRSGSTRRSR AAEVHNLSER  360
KRRDRINEKM KALQELIPHS NKTDKASMLD EAIEYLKSLQ MQLQVMWMGS GMAPMMFPGV  420
QHYISRMGMG MGMGMGPPAL PSMQNPMHLP RHPLVDQCMN VAPAANQTVM CQPPVLNPID  480
YHNQMQNPSF QEQYARLMNF HHMQTMSQPM NMFRFGSQPL QQNKMMAPNG FSSGPFGGGA  540
ATNDPSSGKM SKSLEST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	359	364	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.4	6e-40	bHLH family protein