PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP025214.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family YABBY
Protein Properties Length: 272aa    MW: 31130.1 Da    PI: 9.3785
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP025214.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY185.62.6e-5710724521170
        YABBY  21 ilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirP 118
                  ++ vsvP +slf +vtvrCGhCt+l svn+a a q l+ ++         ++++ + +++n++    ++++ ++++++    + ++++v++   v+rP
  PCP025214.1 107 LFNVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAQNYNYNSQNYRIDSGSSSKCNKKNAT---RDPTSDHVTEERGVNRP 193
                  578*****************************9999999885........5566666666655544443333333333...34455556666679*** PP

        YABBY 119 PekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  PekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  PCP025214.1 194 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 245
                  **************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MMKTLTRMKK RSCQLKDQES QQTLDLKFDE SAMNYRHDLE EFRSGLKKEA TVIREEASHA  60
VKDLPGSLQV GASVAQDKRL SSSRVVKMEE ERQRWGSEGS YKLVVLLFNV SVPCSSLFDI  120
VTVRCGHCTN LWSVNMAAAF QSLSWQDVQA QNYNYNSQNY RIDSGSSSKC NKKNATRDPT  180
SDHVTEERGV NRPPEKRQRV PSAYNQFIKE EIQRIKANNP DISHREAFST AAKNWAHFPH  240
IHFGLMLEAN NQAKLDKDPE KHLMSRPALL NN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.12e-71YABBY family protein