PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026014.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 680aa MW: 75625.7 Da PI: 9.5595

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.7e-08	15	66	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 W t+E++ll+ av+++G+ +W+++ ++ +t+ ck ++++++ PCP026014.1 15 TWGTWEELLLAGAVHRFGTQSWNSVTTELRkrssnlHLLTPHACKRKFHDLR 66 7*****************************9999997799999999999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MDNKPPNFPE QQTPTWGTWE ELLLAGAVHR FGTQSWNSVT TELRKRSSNL HLLTPHACKR 60 KFHDLRRRFN HSDNMSAASD DDKSPIPWLD QLRQRRLDEL RRELQRYDRS IVCLQSKVKR 120 LKEVREHSLK ETEKPVEKSD LEKTGDEEIK PDDESPEKKD ISGDFLVHDG QSFDESNTTD 180 RKPEEPGTGY AGTGNGSDPN KPVEPAGEEI GSAEKSSNPA VEDSCNGSSD SVAKEPAGME 240 SEKGNSGELR ESMAESKGGE EGTKESRQSS SEVKSSVRLS IKAGNDPEPV GPGEPSEPEQ 300 EDQSPATKRV PVESQPLVDF LDILRSHKFA SLFERRLHSQ DDPIYTKMIR QHVDFEMVQS 360 RLEGGWYSHC SRMLFFRDLL IICNNAIVFF GKMSPEYKAA CELRSLVSKE MARLAPKQDA 420 PPEEEILTQP APPLNPDPET SDSLLAKSKL SLPLNACCKR SSIAARASTS SLGPDTRKKQ 480 ATCDVKPAVN WKQKEESSDE IEKFRVTKKR RKEGLGSSTR NNTSKNVRTR SYTNNNRSSD 540 ANENSESKAE TEKKRVVSSN ENSETKAETE KKRNNNASGK KQSAANFLMK SSSSKTRSLL 600 ETSKNPENNS KGRRAEQRKN RNGKGNTQKD QGSRRSSGGR QATKEQESPS KRSAGRPSKR 660 AAAAAPTTAG PAKRARGRGS

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MDNKPPNFPE QQTPTWGTWE ELLLAGAVHR FGTQSWNSVT TELRKRSSNL HLLTPHACKR  60
KFHDLRRRFN HSDNMSAASD DDKSPIPWLD QLRQRRLDEL RRELQRYDRS IVCLQSKVKR  120
LKEVREHSLK ETEKPVEKSD LEKTGDEEIK PDDESPEKKD ISGDFLVHDG QSFDESNTTD  180
RKPEEPGTGY AGTGNGSDPN KPVEPAGEEI GSAEKSSNPA VEDSCNGSSD SVAKEPAGME  240
SEKGNSGELR ESMAESKGGE EGTKESRQSS SEVKSSVRLS IKAGNDPEPV GPGEPSEPEQ  300
EDQSPATKRV PVESQPLVDF LDILRSHKFA SLFERRLHSQ DDPIYTKMIR QHVDFEMVQS  360
RLEGGWYSHC SRMLFFRDLL IICNNAIVFF GKMSPEYKAA CELRSLVSKE MARLAPKQDA  420
PPEEEILTQP APPLNPDPET SDSLLAKSKL SLPLNACCKR SSIAARASTS SLGPDTRKKQ  480
ATCDVKPAVN WKQKEESSDE IEKFRVTKKR RKEGLGSSTR NNTSKNVRTR SYTNNNRSSD  540
ANENSESKAE TEKKRVVSSN ENSETKAETE KKRNNNASGK KQSAANFLMK SSSSKTRSLL  600
ETSKNPENNS KGRRAEQRKN RNGKGNTQKD QGSRRSSGGR QATKEQESPS KRSAGRPSKR  660
AAAAAPTTAG PAKRARGRGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	508	512	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	3e-65	MYB_related family protein