PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP026028.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 234aa    MW: 26393.8 Da    PI: 9.1953
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP026028.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.85.6e-3616114199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  aCaaCk++r+kC ++C+lapyfpa+++++f +vhk+FG+snv+k++k+++e +r+++++slv+eA +r++dPv Ga+g ++ ++ +l++ k++ ++ +
  PCP026028.1  16 ACAACKHQRKKCHAGCILAPYFPADRTREFLAVHKVFGVSNVTKMVKNVEEPNRRKVAESLVWEALCRQKDPVLGAYGEYRMVSDELKRYKQQQNREN 113
                  7******************************************************************************************9988766 PP

       DUF260  99 e 99 
                  +
  PCP026028.1 114 H 114
                  5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MQRTNNNGTA GSTQPACAAC KHQRKKCHAG CILAPYFPAD RTREFLAVHK VFGVSNVTKM  60
VKNVEEPNRR KVAESLVWEA LCRQKDPVLG AYGEYRMVSD ELKRYKQQQN RENHTVPLQV  120
QKGLCFNKSL SDLVGNWNGG ITNGITNVNN SGYLRDNDDV IPDSAPFGYP LNCEQQSHQK  180
VAKQVKMVDS VVVPIHQQQQ HYSVNNINQR YYLTGQFNEI IGKRIEGTIW EGGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-43LBD family protein