PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026070.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 586aa MW: 65462.6 Da PI: 10.2945

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026070.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42	1.6e-13	392	438	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd iN+++ L++l+P+a K +Ka++ ++++Y+++Lq PCP026070.1 392 VHNQSERKRRDLINQKIKALQRLVPNA-----SKTDKASMIDEVIKYLQQLQ 438 6***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence
MSHYSDAQDI ESATAVAAAA FSIHSIEEAK LQYQKRDEGK HSDLKDQESA GSDDWAAKQR 60 SKGCWYPNRA SSSRPSTPAN GYQTQKGSSG RRNAADTKAD AWERAQMKKI QKRYEKVKAT 120 IVAWENEKKT KAKAKMERRK SEIEQRRARN MQHYQIKQAR IDQIAGGARA QVEEKRRNEE 180 SKVKEKLLLV SSGSTRSNYD VTELKLEKGQ LAMHGLGALL RTAQSKPTWS RSRACDTLES 240 IVDQATCHKR DPNIIRHDQI PANTSSVVAS SGETWTDSSV QVPLAQGWIR KRSRSDSGFF 300 ENNFSTNSIH EEHADPSSCA SPGASVRLCR DNHTTTSTLV SFESPSSLKT KSTDEDSASH 360 GGLENRDDGR KTTKGGKSSR SHSTRPGRAA AVHNQSERKR RDLINQKIKA LQRLVPNASK 420 TDKASMIDEV IKYLQQLQAQ VQMMHNLRNF MPNGHMNMNM MVPLEMMQQQ QQQQHLHQMS 480 LLAHMGIGMG TRIHPTPVVA AALPSFMPPF MMPLLMPPHP PPQAKPEPTS TNNGSDPLPD 540 PYCALLAQQS MNMDLFNWMA AHYRQQVTPA TAASSSQPQV NHVRRN

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence

MSHYSDAQDI ESATAVAAAA FSIHSIEEAK LQYQKRDEGK HSDLKDQESA GSDDWAAKQR  60
SKGCWYPNRA SSSRPSTPAN GYQTQKGSSG RRNAADTKAD AWERAQMKKI QKRYEKVKAT  120
IVAWENEKKT KAKAKMERRK SEIEQRRARN MQHYQIKQAR IDQIAGGARA QVEEKRRNEE  180
SKVKEKLLLV SSGSTRSNYD VTELKLEKGQ LAMHGLGALL RTAQSKPTWS RSRACDTLES  240
IVDQATCHKR DPNIIRHDQI PANTSSVVAS SGETWTDSSV QVPLAQGWIR KRSRSDSGFF  300
ENNFSTNSIH EEHADPSSCA SPGASVRLCR DNHTTTSTLV SFESPSSLKT KSTDEDSASH  360
GGLENRDDGR KTTKGGKSSR SHSTRPGRAA AVHNQSERKR RDLINQKIKA LQRLVPNASK  420
TDKASMIDEV IKYLQQLQAQ VQMMHNLRNF MPNGHMNMNM MVPLEMMQQQ QQQQHLHQMS  480
LLAHMGIGMG TRIHPTPVVA AALPSFMPPF MMPLLMPPHP PPQAKPEPTS TNNGSDPLPD  540
PYCALLAQQS MNMDLFNWMA AHYRQQVTPA TAASSSQPQV NHVRRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	397	402	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-36	bHLH family protein