PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP026155.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Whirly
Protein Properties Length: 298aa    MW: 32946.5 Da    PI: 10.2084
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP026155.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly217.41.3e-67992371139
       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 
                  s+yk+kaal+v++++p+f+ ldsg++kl+r+G++ll++a+a+++r ydW++kq+f+ls+te+++lv+l+skes effhdp++++s+eGkvrk+lkveP
  PCP026155.1  99 SIYKGKAALTVEPKAPEFTPLDSGAFKLSREGFVLLQFAPAAGVRVYDWSRKQVFSLSVTEIGSLVSLGSKESLEFFHDPFKGKSDEGKVRKVLKVEP 196
                  7************************************************************************************************* PP

       Whirly  99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                  lpdGsG+f+nlsv+n+l++ +es+++P+++aefavl+s+++
  PCP026155.1 197 LPDGSGHFFNLSVQNKLINLDESIYIPITRAEFAVLKSAFN 237
                  **************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MLKLHKLSSP AIAQKPNQNP SQFLSSQLLS RARVFSTNTF GFAPSPISSR KRLSLKCRQS  60
EYFDQQRTST AASPNKPSPA PPTPAGATGM APRFYVGHSI YKGKAALTVE PKAPEFTPLD  120
SGAFKLSREG FVLLQFAPAA GVRVYDWSRK QVFSLSVTEI GSLVSLGSKE SLEFFHDPFK  180
GKSDEGKVRK VLKVEPLPDG SGHFFNLSVQ NKLINLDESI YIPITRAEFA VLKSAFNFIL  240
PYILGWHAYA NSIKPEDSSR ANNSGLKYGG DFEWSRCMGL WWDGEGGGWR GFKEERGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-123Whirly family protein