PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP026280.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 234aa    MW: 26733.6 Da    PI: 5.6828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP026280.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.8e-16132182255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp     k +r++lg+f t  +Aaka++ a+ kl+g
  PCP026280.1 132 HYRGVRRRP-WGKYAAEIRDP---ArKGTRVWLGTFETDVDAAKAYDFAAFKLRG 182
                  7********.**********8...4445**********99*************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MSTHEEQDYS TLELIRQHLL EDFTFTDSFI SHLNFEITPD DISYFEFQPV KPEYSSLSES  60
GSSSPISTPN YHSRQLSNSE TKPESVNLPS MEVEHLNLSS QCSPKRKNST CQTSSSKDEL  120
QQVSGSGDVL RHYRGVRRRP WGKYAAEIRD PARKGTRVWL GTFETDVDAA KAYDFAAFKL  180
RGRKAILNFP LEAGLYESPV NMARKRRRSV KQEEATETEE LELQSWVLWE GQGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204208RKRRR
2204209RKRRRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61590.12e-39ERF family protein