PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026366.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 516aa MW: 56842.6 Da PI: 8.7365

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026366.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.6e-17	155	204	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PCP026366.1 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 204 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MLDLNLNVVV SGQNDVESCG TQMDESGTSN SSVVNADASS TNDDSCSARA ARNDAVTIFN 60 FGILKVRDGE EEEDDDVVVT KELFPVTGGL NNWPGQGESS SSSPLVRKNL MELGFTRGSA 120 GEVRLVQQKQ PPQPAAPPPQ QQAKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV 180 YLGGFDTAHA AARAYDRAAI KFRGVDADIN YNLSDYEDDL KQMKNLTKEE FVHILRRQST 240 GFSRGSSRYR GVTLHKCGRW EARMGQFLGK NLLFSLSEKQ VLVRISKKKI NVVGTVVSSW 300 RLQCLHAGFH PTHLSLLIFL EIRAYDKTAI KYNGREAVTN FEPSTYEGKM MSEAGNEDGN 360 HNLDLNLGIS PPSFGTGQKE GKGRLQFHSG PFDVHNGKRM EHNVNLTMSD PPFKGLVMTS 420 DHHPPLWNGV YPSYFSNQEN ATEKSLALGS QGHPNWAWQM HGQVTPMPLF STAASSGFSF 480 SANAPAAAVH PLQPPNPTAL NLCFTSPAAA TTRTSQ

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MLDLNLNVVV SGQNDVESCG TQMDESGTSN SSVVNADASS TNDDSCSARA ARNDAVTIFN  60
FGILKVRDGE EEEDDDVVVT KELFPVTGGL NNWPGQGESS SSSPLVRKNL MELGFTRGSA  120
GEVRLVQQKQ PPQPAAPPPQ QQAKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHA AARAYDRAAI KFRGVDADIN YNLSDYEDDL KQMKNLTKEE FVHILRRQST  240
GFSRGSSRYR GVTLHKCGRW EARMGQFLGK NLLFSLSEKQ VLVRISKKKI NVVGTVVSSW  300
RLQCLHAGFH PTHLSLLIFL EIRAYDKTAI KYNGREAVTN FEPSTYEGKM MSEAGNEDGN  360
HNLDLNLGIS PPSFGTGQKE GKGRLQFHSG PFDVHNGKRM EHNVNLTMSD PPFKGLVMTS  420
DHHPPLWNGV YPSYFSNQEN ATEKSLALGS QGHPNWAWQM HGQVTPMPLF STAASSGFSF  480
SANAPAAAVH PLQPPNPTAL NLCFTSPAAA TTRTSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	2e-91	AP2 family protein