PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP026371.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 259aa    MW: 29725.4 Da    PI: 8.3435
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP026371.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
      PCP026371.1 12 RGPWTEQEDFQLVCFVGLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 59
                     89********************************************97 PP
2Myb_DNA-binding55.81.1e-1765110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
      PCP026371.1  65 RGKMTPQEERLVLELHTKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 110
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MKMVQDQEQI RRGPWTEQED FQLVCFVGLF GDRRWDFIAK VSGLKRTGKS CRLRWVNYLH  60
PGLKRGKMTP QEERLVLELH TKWGNRWSRI ARKLPGRTDN EIKNYWRTHM RKKAQEKKRA  120
VSPSSSYSNC SSSSNITTAE GGASFYDTGG KETKASSGGK KTGGGDEAKE DEKREQREYS  180
LDDIWKDINL PEVNIIEPVY DGNLSSCPLM ASPTPWEYCS DLLWKMDEEE ESKNMFLPTP  240
SGDHQFLSCY EYGKASLTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158165GGKKTGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.15e-84MYB family protein