PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026582.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YA

Protein Properties

Length: 660aa MW: 72089.3 Da PI: 9.9473

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026582.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.4	4.1e-32	165	221	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k+rkpylheSRh hAlrR+Rg+gGrF PCP026582.1 165 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKARKPYLHESRHLHALRRARGCGGRF 221 69**************************.************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MMPAKSKDED PHIKHGAQTV LQPIYSQPWW RGGGNGSASS LVDHSNSMVM NGAMQAQPNA 60 RLDGGGANFH KELRTTVGLQ PDGNNGSENQ HIKSVSSSVV PALGEHVDPN SQMELVGHSI 120 VMSSYPYSDP QYGGMLTPYG PQAMLPPHFY GMHPGRMPLP LDMEEEPVYV NAKQYHGILR 180 RRQSRAKAEL EKKLIKARKP YLHESRHLHA LRRARGCGGR FLNTKKQDAN DENSSLEKGM 240 NLDGNHSGQS AKSGFECFPN TSNADVDSSN VQQDGSGPWF RTHNHHTRSN GNGTDHGPSS 300 AYPSAFGDSR ENMQLKGSSR GAIPSEAQGV HGLSWGKPGC AMSLSGKSFL ALVTLGFGGL 360 KWKLTGRGCG ACWCSASVSS EFGLRIFTKA FFRKLLIKLW SSSNAGGALM WTFWSAGITN 420 TIGPAMGIEA LKYISYPAQV LAKSSKMIPV MLMGTLVYGK RYSFPEYVCT LLVAGGVSIF 480 ALLKTSSKTI SKLAHPNAPL GYGLCFLNLA FDGFTNATQD SITASYAKTS AWDIMLGMNL 540 WGTIYNMIYM FGWPRGSGFE AVQFCKQHPE AAWDIFLYCL CGAVGQNFIF LTISRFGSLA 600 NTTITTTRKF VSIVVSSVLS GNPLSTKQWG SVVMVFSGLS YHIHHKWRKL QRAPQKRKPM

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MMPAKSKDED PHIKHGAQTV LQPIYSQPWW RGGGNGSASS LVDHSNSMVM NGAMQAQPNA  60
RLDGGGANFH KELRTTVGLQ PDGNNGSENQ HIKSVSSSVV PALGEHVDPN SQMELVGHSI  120
VMSSYPYSDP QYGGMLTPYG PQAMLPPHFY GMHPGRMPLP LDMEEEPVYV NAKQYHGILR  180
RRQSRAKAEL EKKLIKARKP YLHESRHLHA LRRARGCGGR FLNTKKQDAN DENSSLEKGM  240
NLDGNHSGQS AKSGFECFPN TSNADVDSSN VQQDGSGPWF RTHNHHTRSN GNGTDHGPSS  300
AYPSAFGDSR ENMQLKGSSR GAIPSEAQGV HGLSWGKPGC AMSLSGKSFL ALVTLGFGGL  360
KWKLTGRGCG ACWCSASVSS EFGLRIFTKA FFRKLLIKLW SSSNAGGALM WTFWSAGITN  420
TIGPAMGIEA LKYISYPAQV LAKSSKMIPV MLMGTLVYGK RYSFPEYVCT LLVAGGVSIF  480
ALLKTSSKTI SKLAHPNAPL GYGLCFLNLA FDGFTNATQD SITASYAKTS AWDIMLGMNL  540
WGTIYNMIYM FGWPRGSGFE AVQFCKQHPE AAWDIFLYCL CGAVGQNFIF LTISRFGSLA  600
NTTITTTRKF VSIVVSSVLS GNPLSTKQWG SVVMVFSGLS YHIHHKWRKL QRAPQKRKPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	3e-36	NF-YA family protein