PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026600.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 228aa MW: 26696.2 Da PI: 8.3352

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026600.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.1	1e-18	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v+++G g+W++++r g++R +k+c++rw +yl PCP026600.1 17 KGPWTPEEDKLLSEYVTLHGDGRWSSVPRSTGLNRNGKSCRLRWVNYL 64 79********************************************97 PP
2	Myb_DNA-binding	50	6.7e-16	71	114	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ PCP026600.1 71 GHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNFWRTH 114 667****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MVAMMGWGGV GEQGWRKGPW TPEEDKLLSE YVTLHGDGRW SSVPRSTGLN RNGKSCRLRW 60 VNYLRPGLKK GHITPQEEGI IIELHALWGN KWSTIARYLP GRTDNEIKNF WRTHFKKKDK 120 CTQKQEKRKA EILKAKQQQF EEDQNMKARA TTPHHHWEAC SQGIISNMNN IDIHETQATW 180 QENMEEDKYC LPKLMHQASV EFWSDLLGEE GFYKLWNLDD VSGRMDLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30210.1	1e-64	MYB family protein