PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP026768.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 213aa    MW: 23041.2 Da    PI: 8.1455
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP026768.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.8e-41161161100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+vg+i++lqqq+++l+a+l + 
  PCP026768.1  16 PCGACKFLRRKCAPDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVGHIFALQQQVACLQAQLMQS 113
                  7*************************99*******************************************************************998 PP

       DUF260  98 kee 100
                  k++
  PCP026768.1 114 KAQ 116
                  887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MASGGAGSAG IGTGSPCGAC KFLRRKCAPD CIFAPYFCSE QGPARFAAIH KVFGASNVSK  60
LLLHVPVHDR CEAVVTIAYE AQARIRDPVY GCVGHIFALQ QQVACLQAQL MQSKAQLAHQ  120
SLVDSRNMES TQWQGNGIGN GSVASFPSYT SYMNPISPQS SLDSIDPNSD IAINMQEIQS  180
SREEFSYQVC SKKRPYNGNL GELQALALRM MRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-62LBD family protein