PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026835.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-X1

Protein Properties

Length: 1104aa MW: 119873 Da PI: 8.0498

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026835.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	20.2	1.3e-06	292	308	3	19
zf-NF-X1 3 kHkCqklCHeGpCppCp 19 +H+C+++CH GpC+pC+ PCP026835.1 292 RHRCERTCHVGPCDPCQ 308 7***************7 PP
2	zf-NF-X1	20.1	1.4e-06	354	371	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C++ CH+GpC+ C PCP026835.1 354 CGNHSCSEVCHPGPCGDC 371 ****************99 PP
3	zf-NF-X1	26.2	1.7e-08	412	429	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+Cq+ CH+G+CppC PCP026835.1 412 CGMHQCQEVCHTGDCPPC 429 ****************** PP
4	zf-NF-X1	17.3	1e-05	508	525	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C++lCH G CppC PCP026835.1 508 CGQHSCESLCHSGHCPPC 525 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 1104 aa Download sequence
MSSHVRNERR DRSRFPAQPA AQPTQPARRE WVPRGSNPTI ATAAVNPPPQ VDPNNLNGNV 60 SQPNSRFHPN NQNGNVTQPN LRFNPNNLNG SVSQPTPRFN LDNPNSNVSH PNHSSVPSEI 120 RPHRGGNNGV RGQGRPVNHR RERGRNDNQE EKGLKDSNLP QLVQEIQDKL TKGTVECMIC 180 YDMVRRSAPV WSCSSCYSIF HLACIKKWAR APTSIDMSAG KNQGFNWRCP GCQSVQLTSS 240 KEIRYVCFCG KRTDPPSDLY LTPHSCGEPC GKQLEREVPG KGHCNKLLDC WRHRCERTCH 300 VGPCDPCQIL VDASCFCKKK VEVVLCGDMT VKGEVKAEDG VFSCSSTCGK MLSCGNHSCS 360 EVCHPGPCGD CNLMPSKIKT CHCGKTSLQE ERQSCLDLIP TCSQLCGKSL PCGMHQCQEV 420 CHTGDCPPCL VEVTQKCRCG STSRTVECFK TTMENEKFTC DKPCGQKKNC GRHRCSERCC 480 PLSNSNNALS GDWDPHFCSM PCGKKLRCGQ HSCESLCHSG HCPPCLDTIF TDLTCACGRT 540 SIPPPLPCGT PPPSCQLPCS LPQPCGHTSS HSCHFGDCPP CSVPVAKECI GGHVVLRNIP 600 CGSRDIKCNK LCGKTRQCGM HACGRTCHPP PCDTSCSAEQ GSKTSCGQIC GAPRRDCRHT 660 CTSLCHPYAS CPDSRCDFPV TITCSCGRMT ATVPCDSGGS NASFKADTVY EASVIQRLPA 720 PLQPIESTGK KIPLGQRKLM CDDECAKMER KRVLADAFDI APPNLDALHF GESSAVSELL 780 SDLLRRDPKW VLSVEERCKY LVLGKSRGAT SGLKVHVFCP MLKEKRDVVR MIAERWKLAV 840 QAAGWEPKRF IVVHVTPKSK APTRILGVKG TTTVSAPQPP AYDYLVDMDP RLVVSFPDLP 900 RDADISALVL RFGGECELVW LNDKNALAVF NDPARAATAM RRLDNGALYH GAIVVHSNGS 960 ASMAASGSNA WGGLGTAKEG GASAVLRGNP WKKAVTRESG WREDSWGEEE WSGSSTDAQA 1020 NVWNKEVPIA ASVNRWSVLD SDTALGSSAS SPRVEDSRKQ PLGPPNLGLE SKASGSSSSS 1080 TLAGQPVGVI ADTPEVDDWE KAYE

Sequence ? help Back to Top

Protein Sequence Length: 1104 aa Download sequence

MSSHVRNERR DRSRFPAQPA AQPTQPARRE WVPRGSNPTI ATAAVNPPPQ VDPNNLNGNV  60
SQPNSRFHPN NQNGNVTQPN LRFNPNNLNG SVSQPTPRFN LDNPNSNVSH PNHSSVPSEI  120
RPHRGGNNGV RGQGRPVNHR RERGRNDNQE EKGLKDSNLP QLVQEIQDKL TKGTVECMIC  180
YDMVRRSAPV WSCSSCYSIF HLACIKKWAR APTSIDMSAG KNQGFNWRCP GCQSVQLTSS  240
KEIRYVCFCG KRTDPPSDLY LTPHSCGEPC GKQLEREVPG KGHCNKLLDC WRHRCERTCH  300
VGPCDPCQIL VDASCFCKKK VEVVLCGDMT VKGEVKAEDG VFSCSSTCGK MLSCGNHSCS  360
EVCHPGPCGD CNLMPSKIKT CHCGKTSLQE ERQSCLDLIP TCSQLCGKSL PCGMHQCQEV  420
CHTGDCPPCL VEVTQKCRCG STSRTVECFK TTMENEKFTC DKPCGQKKNC GRHRCSERCC  480
PLSNSNNALS GDWDPHFCSM PCGKKLRCGQ HSCESLCHSG HCPPCLDTIF TDLTCACGRT  540
SIPPPLPCGT PPPSCQLPCS LPQPCGHTSS HSCHFGDCPP CSVPVAKECI GGHVVLRNIP  600
CGSRDIKCNK LCGKTRQCGM HACGRTCHPP PCDTSCSAEQ GSKTSCGQIC GAPRRDCRHT  660
CTSLCHPYAS CPDSRCDFPV TITCSCGRMT ATVPCDSGGS NASFKADTVY EASVIQRLPA  720
PLQPIESTGK KIPLGQRKLM CDDECAKMER KRVLADAFDI APPNLDALHF GESSAVSELL  780
SDLLRRDPKW VLSVEERCKY LVLGKSRGAT SGLKVHVFCP MLKEKRDVVR MIAERWKLAV  840
QAAGWEPKRF IVVHVTPKSK APTRILGVKG TTTVSAPQPP AYDYLVDMDP RLVVSFPDLP  900
RDADISALVL RFGGECELVW LNDKNALAVF NDPARAATAM RRLDNGALYH GAIVVHSNGS  960
ASMAASGSNA WGGLGTAKEG GASAVLRGNP WKKAVTRESG WREDSWGEEE WSGSSTDAQA  1020
NVWNKEVPIA ASVNRWSVLD SDTALGSSAS SPRVEDSRKQ PLGPPNLGLE SKASGSSSSS  1080
TLAGQPVGVI ADTPEVDDWE KAYE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein