PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP026843.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 234aa    MW: 25844.9 Da    PI: 8.4741
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP026843.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.63.8e-242168249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 + en s +qvtfskRr+gi+KKA ELSvLC+a+vavi+fs+ gk++ y
  PCP026843.1 21 KLENLSSKQVTFSKRRAGIFKKAAELSVLCGADVAVIVFSTAGKVFCY 68
                 67999***************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MVLLKNLPKK TQGRKRIEIK KLENLSSKQV TFSKRRAGIF KKAAELSVLC GADVAVIVFS  60
TAGKVFCYGH PSVDTTLDWY CSGVTPPAVS DDTAGDQSPN RVPVAEFNKE YMEAIRELEE  120
QKKRVAEVKE AAKMKKIVMG VVGGCGERFW WEDESVDLDA LDVQEVEHYL ITLEDVRKQV  180
AARLHEMKIL NGTLNPGALP PIPAVHRLCH LPMMTNGFSG HGAQFGGGYR GFGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-27M-type_MADS family protein