PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026873.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 507aa MW: 57202 Da PI: 5.301

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026873.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.2e-13	308	355	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h ErrRR+++N++f L++++P+ K +K++iL ++e++k+L+ PCP026873.1 308 TNHALSERRRREKLNERFCILKSMVPSV-----SKEDKVSILDDTIEHLKDLE 355 68999********************6.....49*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MAVPENLRKQ LALSVRSIQW SYGIFWSISA RQPGVLEWGD GYYNGDIKTR KTVQAVELDA 60 DQMGLQRSEQ LRELYDSLSV GEASPQARRP SASLSPEDLA DTEWYYLVWC QEMDVTSPDD 120 SSNGLGPNQL ADDSFMVEGM NGGASQVQSW QFMDDELSNF VHHSMDSSDC ISQTLVYPEK 180 VLSGPKTEKA NDHCPQEHQE YNSTKKTSLD PQGNDLQYKS VLSALLKSSH QLVLGPHFQN 240 SHQESSFTSW KRGGFVKCRT QRGGTPQKLL KKILLEVPQM HVDCVLEPPE DTSNVNEVCR 300 PEADDIDTNH ALSERRRREK LNERFCILKS MVPSVSKEDK VSILDDTIEH LKDLEKRVEE 360 LESFWELTNS DSKMKRKLQE TVERTSDNCC NPKISNGKKP IVYKRKASDV DETEPEINHI 420 VSKNVSSDNI TVNTNNKDVL IEMKFPWREG VLLEIMDATS RLHLDAHSVQ SSTADGILSL 480 TIKSRFKGTS IASAGTIKQA LDRFARS

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MAVPENLRKQ LALSVRSIQW SYGIFWSISA RQPGVLEWGD GYYNGDIKTR KTVQAVELDA  60
DQMGLQRSEQ LRELYDSLSV GEASPQARRP SASLSPEDLA DTEWYYLVWC QEMDVTSPDD  120
SSNGLGPNQL ADDSFMVEGM NGGASQVQSW QFMDDELSNF VHHSMDSSDC ISQTLVYPEK  180
VLSGPKTEKA NDHCPQEHQE YNSTKKTSLD PQGNDLQYKS VLSALLKSSH QLVLGPHFQN  240
SHQESSFTSW KRGGFVKCRT QRGGTPQKLL KKILLEVPQM HVDCVLEPPE DTSNVNEVCR  300
PEADDIDTNH ALSERRRREK LNERFCILKS MVPSVSKEDK VSILDDTIEH LKDLEKRVEE  360
LESFWELTNS DSKMKRKLQE TVERTSDNCC NPKISNGKKP IVYKRKASDV DETEPEINHI  420
VSKNVSSDNI TVNTNNKDVL IEMKFPWREG VLLEIMDATS RLHLDAHSVQ SSTADGILSL  480
TIKSRFKGTS IASAGTIKQA LDRFARS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	314	319	ERRRRE
2	315	320	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-104	bHLH family protein