PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026994.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 1093aa MW: 121613 Da PI: 9.2828

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026994.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.1	1.8e-12	733	789	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n+ ++k+ + g ++++e+Aa+ ++ a++k++g PCP026994.1 733 SIYRGVTRHRWTGRFEAHLWDkSSWNNiQNKKGRQGAYDSEEGAARTYDLAALKYWG 789 57*****************777799988888********************98 PP
2	AP2	51.3	2.9e-16	832	883	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g PCP026994.1 832 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYNTQEEAAAAYDMAAIEYRG 883 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1093 aa Download sequence
MAVSAFKSST KRSTATTTTT TSNFSAPSSS SSSAGRQITD KDNPPPKKAP IRRSRSVSAF 60 SRTSLDASAE SFLNKRDNPL FWSTDSQAVD SQNLVKPAKF DSVTSKDSRP ATFTGADTRR 120 GRSAARNADA LGTRKEVGRS LSRVDPGRRN RSVSRGPDSR RSFVNPKSED EQECGSLSKL 180 GNDRKKGGLV RSSSALLDQV KGLRTWSSQH SQELDANLSS SQSLNWEDGV SVASSLSGAE 240 EKTVKAVCEQ LNVNCGRPFN DLSVQGNHLE GDTTTSSIYE TVRSEVRRAI SEIQNDLASA 300 MQRSNTPALA NTDISDIPPD LVNPSAVELV LDIRREYAKK LEQSYSISIL QVRRLKSLKW 360 LLHEPMLRVS TYLASPFGQS QERARKLQSD LAVEEHRAQE LSRILKEVLP DPKTPSVPKS 420 RPGRKASIER RKMSKRLTDE AMAYFDECVS LSTFDSSDFS SPEDPPFNLT GFTTPVRKGS 480 SLLQANSVAS VTNSSNFCLN DLKELNIERQ FSNERHASGL MASGGPREPA LNQISPNSAK 540 RGQDWKFSFA HKPTAETLDL QQDIKKLQHK AICSTGSCLE TEYRRVVFYS AVLWTVSSLP 600 LPLPFLVNHF WLPNATSSSY ASPSTPPPPA FNYLTIKTSH AFIHFFQVHR ISRSMKRYSS 660 FSCSSSSSSS SSCSALEIPK HNVQAEIQKL KPKPKPKPKR VRKKRKTAEA AAAADKCKNG 720 NTPKSGTGGR RSSIYRGVTR HRWTGRFEAH LWDKSSWNNI QNKKGRQGAY DSEEGAARTY 780 DLAALKYWGP GTILNFPLET YTKEIEEMEK ATREEYLASL RRLSSGFSRG VSKYRGVARH 840 HHNGRWEARI GRVFGNKYLY LGTYNTQEEA AAAYDMAAIE YRGTNAVTNF DISNYVDRVK 900 KKIHPLDHQK SEGQQPSNCS NTGPHKQEEE VECKVHQLLP QQQQQQQEQE QRKVHQLQPQ 960 QQQQEQERMI YPHLLHCMES NTMEQVMDRD HAEEHQFSWN FLDTGMMTQQ VPVPDDIPLD 1020 NKSLELPDSF EDLGFEENFD LIFGATDDGS LGGLMESAGC GVDQVGVDVG VPGNLEDNGS 1080 SFSPSSTTTS LSL

Sequence ? help Back to Top

Protein Sequence Length: 1093 aa Download sequence

MAVSAFKSST KRSTATTTTT TSNFSAPSSS SSSAGRQITD KDNPPPKKAP IRRSRSVSAF  60
SRTSLDASAE SFLNKRDNPL FWSTDSQAVD SQNLVKPAKF DSVTSKDSRP ATFTGADTRR  120
GRSAARNADA LGTRKEVGRS LSRVDPGRRN RSVSRGPDSR RSFVNPKSED EQECGSLSKL  180
GNDRKKGGLV RSSSALLDQV KGLRTWSSQH SQELDANLSS SQSLNWEDGV SVASSLSGAE  240
EKTVKAVCEQ LNVNCGRPFN DLSVQGNHLE GDTTTSSIYE TVRSEVRRAI SEIQNDLASA  300
MQRSNTPALA NTDISDIPPD LVNPSAVELV LDIRREYAKK LEQSYSISIL QVRRLKSLKW  360
LLHEPMLRVS TYLASPFGQS QERARKLQSD LAVEEHRAQE LSRILKEVLP DPKTPSVPKS  420
RPGRKASIER RKMSKRLTDE AMAYFDECVS LSTFDSSDFS SPEDPPFNLT GFTTPVRKGS  480
SLLQANSVAS VTNSSNFCLN DLKELNIERQ FSNERHASGL MASGGPREPA LNQISPNSAK  540
RGQDWKFSFA HKPTAETLDL QQDIKKLQHK AICSTGSCLE TEYRRVVFYS AVLWTVSSLP  600
LPLPFLVNHF WLPNATSSSY ASPSTPPPPA FNYLTIKTSH AFIHFFQVHR ISRSMKRYSS  660
FSCSSSSSSS SSCSALEIPK HNVQAEIQKL KPKPKPKPKR VRKKRKTAEA AAAADKCKNG  720
NTPKSGTGGR RSSIYRGVTR HRWTGRFEAH LWDKSSWNNI QNKKGRQGAY DSEEGAARTY  780
DLAALKYWGP GTILNFPLET YTKEIEEMEK ATREEYLASL RRLSSGFSRG VSKYRGVARH  840
HHNGRWEARI GRVFGNKYLY LGTYNTQEEA AAAYDMAAIE YRGTNAVTNF DISNYVDRVK  900
KKIHPLDHQK SEGQQPSNCS NTGPHKQEEE VECKVHQLLP QQQQQQQEQE QRKVHQLQPQ  960
QQQQEQERMI YPHLLHCMES NTMEQVMDRD HAEEHQFSWN FLDTGMMTQQ VPVPDDIPLD  1020
NKSLELPDSF EDLGFEENFD LIFGATDDGS LGGLMESAGC GVDQVGVDVG VPGNLEDNGS  1080
SFSPSSTTTS LSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	691	704	KPKPKPKPKRVRKK
2	693	706	KPKPKPKPKRVRKK
3	698	706	PKRVRKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	7e-94	AP2 family protein