PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027041.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARR-B

Protein Properties

Length: 579aa MW: 64940.1 Da PI: 7.0511

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027041.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86	3.8e-27	316	370	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G ++A+P++il+lmk +gLt+++v+SHLQkYR++ PCP027041.1 316 KMKVDWTPELHKKFVKAVEQL-GVDQAIPSRILDLMKTEGLTRHNVASHLQKYRMH 370 5689***************.******************************96 PP
2	Myb_DNA-binding	44	5e-14	319	368	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e+++++v+av+qlG + +++I m +g+t+ ++ s++qky+ PCP027041.1 319 VDWTPELHKKFVKAVEQLGVDqaIPSRILDLMKtEGLTRHNVASHLQKYR 368 57***********************************************7 PP
3	Response_reg	34	1.5e-12	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl+ d + + ++ +r+ le +y +v+e+ + +eal + + +++ ++ ++ + G+++l++ + +lpii+ + +++ +++ +Ga PCP027041.1 20 VLLLDGDTTSASQIRSNLEAMDY-IVTEFCNETEALSAFSSNPesFHVAIIEVNANNgHRGFQFLETAK----ELPIIMTSNIHCLSTMMKCIALGA 111 78889999999**********.***********777767***99987667777776655....588988888888******** PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 +fl Kp+++++l++ PCP027041.1 112 VEFLLKPVSEDKLRN 126 **********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MVCTANDLQQ WNDFPKGLRV LLLDGDTTSA SQIRSNLEAM DYIVTEFCNE TEALSAFSSN 60 PESFHVAIIE VNANNGHRGF QFLETAKELP IIMTSNIHCL STMMKCIALG AVEFLLKPVS 120 EDKLRNIWQH VVHKAFNAGG SPISETLKPV KVSVVSMLQP KQENEEQNCK ISIETENVIR 180 VHENDQEQSA GSDKYPAPST PQIKQGSRLL DHGDCQYQIN CMSEKVSREN GSESKSIETM 240 FCNPIDERNL HTREPHHMPR KTVIKEENDS GDGSKSEVNM SHHPDNIDSG NDNGGAAENL 300 SKASVPNTSC KSNRKKMKVD WTPELHKKFV KAVEQLGVDQ AIPSRILDLM KTEGLTRHNV 360 ASHLQKYRMH KRHILPKDED QRLLWPHHPP GARDPTHQTS YYPRSHRPIM AFPPYHYNNT 420 TLSKPPAYPM WGSQPPAGSH PATVQMWGQP GYPHSHWQLS DQSWQYWNPY PGMQAEAWGC 480 PVMPPDQGGY SSYPQNASGF RSAGGHVVEN GHRYSMPRKS FNIHLSEEVV DKVMKEAISK 540 PWLPLPLGLK PPSTEGVLAE LTRQGICNIP QINGSHTQG

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MVCTANDLQQ WNDFPKGLRV LLLDGDTTSA SQIRSNLEAM DYIVTEFCNE TEALSAFSSN  60
PESFHVAIIE VNANNGHRGF QFLETAKELP IIMTSNIHCL STMMKCIALG AVEFLLKPVS  120
EDKLRNIWQH VVHKAFNAGG SPISETLKPV KVSVVSMLQP KQENEEQNCK ISIETENVIR  180
VHENDQEQSA GSDKYPAPST PQIKQGSRLL DHGDCQYQIN CMSEKVSREN GSESKSIETM  240
FCNPIDERNL HTREPHHMPR KTVIKEENDS GDGSKSEVNM SHHPDNIDSG NDNGGAAENL  300
SKASVPNTSC KSNRKKMKVD WTPELHKKFV KAVEQLGVDQ AIPSRILDLM KTEGLTRHNV  360
ASHLQKYRMH KRHILPKDED QRLLWPHHPP GARDPTHQTS YYPRSHRPIM AFPPYHYNNT  420
TLSKPPAYPM WGSQPPAGSH PATVQMWGQP GYPHSHWQLS DQSWQYWNPY PGMQAEAWGC  480
PVMPPDQGGY SSYPQNASGF RSAGGHVVEN GHRYSMPRKS FNIHLSEEVV DKVMKEAISK  540
PWLPLPLGLK PPSTEGVLAE LTRQGICNIP QINGSHTQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-145	ARR-B family protein