PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027110.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 212aa    MW: 23032.1 Da    PI: 7.9469
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027110.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.72.7e-40171181101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++
  PCP027110.1  17 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPAHDRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQV 114
                  7*************************99********************************************************************99 PP

       DUF260  98 keel 101
                  k++l
  PCP027110.1 115 KAQL 118
                  9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MASGGGAGSA GTGTGSPCGA CKFLRRKCAS DCIFAPYFCS EQGPARFAAI HKVFGASNVS  60
KLLLHVPAHD RCEAVVTIAY EAQARIRDPV YGCVAHIFSL QQQVACLQAQ LMQVKAQLAH  120
QNLIDSRNME STQWQGNVNG SVSSFPSYPS YVNPISPQSS LDSMDPNSDI AMHMQEIQSS  180
REEFSYQGCS KKRQYNGDLG ELQALALRMM RN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-61LBD family protein