PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027135.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 254aa    MW: 29065.4 Da    PI: 9.8677
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027135.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.71.5e-181150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i+n+s r+ t+ kR++g++KK +ELS+LCd++++ ii+s+
  PCP027135.1 11 ISNDSARKATYKKRKKGLMKKVSELSTLCDVQACAIIYSP 50
                 9**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MTRKKVKLTY ISNDSARKAT YKKRKKGLMK KVSELSTLCD VQACAIIYSP YDSQPEVWPS  60
PLGVQRVLAQ FKTMPEMEQS KKMVNQESFL RQRIAKANEQ LKKQRKENRE KEMTRVMFQS  120
LTGKSLQGLS MVDLNDLGWL VEQNLKEIHN RMKILNDQES KSQVQLQPTA LPAAAATAAE  180
CGGERQQGFA LNNNMDTAMQ RQQQPWFMDM MNVPQDHQQQ HMAGLGGGDE MHMLPFPADH  240
SQINAIWSNN SFYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLTYISNDSARKATYKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-67M-type_MADS family protein