PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027478.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Nin-like
Protein Properties Length: 260aa    MW: 29630 Da    PI: 6.1571
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027478.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK811.2e-25146193552
       RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ++l++++kyF+ pi++AAkeL+v+lTvLKr+CR+++I+RWP+Rkiksl
  PCP027478.1 146 LELDEIQKYFDVPITQAAKELKVGLTVLKRRCRELNIMRWPRRKIKSL 193
                  7899******************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MADSISSQLL FPKIETDPHE FNSSIHAAAL ESLHLENFNG FDSPPLPLGC KSNQLPKMGS  60
QDFEDSGIWD YILNDAAFRS PFGYEVVDEK PLTTMAESVD CSNSVSGDSD DVLRTIEWGM  120
KIWGKDEDES RTKNESCCKK RCGTPLELDE IQKYFDVPIT QAAKELKVGL TVLKRRCREL  180
NIMRWPRRKI KSLNALIENV KGMGLTNDVM MLEEHKRVLQ QMPDMELPER AKRLRQACFK  240
TNYKKKRALC LTALPVQDLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.16e-41Nin-like family protein