PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027493.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YA

Protein Properties

Length: 993aa MW: 109826 Da PI: 8.2096

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027493.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100	2.4e-31	838	894	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl ksrkpylheSRh hAl+R RgsgGrF PCP027493.1 838 DGPIYVNAKQYRGILRRRQSRAKLEAQNKL-LKSRKPYLHESRHLHALNRVRGSGGRF 894 57**************************.************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence
MSFLRRRKGK ATSDSEPPSP PIDDNSEKEK ETQAQKQQKQ NHKKNGGEKP HKWSCVDNCC 60 WFIGFICSIW WLLLFLYNAM PASFPQYVTE AITGPMTDPP GVKLRKEGLT AKHPVVFVPG 120 IVTGGLELWE GHGCADGLFR KRLWGGTFGE LYKRPLCWVE HMSLDNETGL DPPGVRVRPV 180 SGLVAADYFA PGYFVWAGFN CKFGSHRVRD QTLSRIKSHI ELMVASNGGN KVVVIPHSMG 240 VLYFLHFMKW VEAPRPMGGG GGSDWCAKHI KALMNIGGPF LGVPKALAGI FSMEARDIAV 300 ARAFAPGVLD KDVFGLQTLQ HLMRMTRTWD ATMSMIPKGG DTIWGGLDWS PEGYCNYGAK 360 KVKNDDTNSE VETRVNYGRI VSFGKDVAEA DSSKIERIDF RDAVKGNYLA NATHCDVWTE 420 YHEMGVGGVK AVADYKVYTA GSVLDLFHFV APKLMARGDN HFSYGIADNL DDPKYEHYKY 480 WSNPLETKLP NAPDMEIYSM YGVGIPTERA YVYKLTPSAE CYIPFQIDNS AEGGSEDPCL 540 KGGIFSADGD ETVPVLSAGF MCAKGWRGKT RFNPAGIPTY IREYDHAPPA NLLEGRGTQS 600 GAHVDIMGNF ALIEDVLRVA AGATGQELGG DKVHSDIFKC LDGFNEARNG FKDRIPRHAG 660 LLPIQSPVSA CGALYWHLTN NQILAFYQDK DAWKTFALPH SVRNDKYWKY NPAACQVRLA 720 LVRKEDQEFM DVMGVSEDGK VVKLSPSSVS GFIPVLGEDE TYGKGADGKL KPVFLPSNQD 780 LMLNPSQVGY SNVVGCIPYP YVGPYFSGFA TAYGSQAMSH MLGIVPTRVP LPPDLAQDGP 840 IYVNAKQYRG ILRRRQSRAK LEAQNKLLKS RKPYLHESRH LHALNRVRGS GGRFLSTKRQ 900 SDQSASSSTH HVSDSISVHQ KDTGDTESHH LESSEFLRSV AIHSDMTSVS NTNDNFRQAD 960 RRFSGIPPHM SGAMEFHGGF MRAGNQHSAS VVR

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence

MSFLRRRKGK ATSDSEPPSP PIDDNSEKEK ETQAQKQQKQ NHKKNGGEKP HKWSCVDNCC  60
WFIGFICSIW WLLLFLYNAM PASFPQYVTE AITGPMTDPP GVKLRKEGLT AKHPVVFVPG  120
IVTGGLELWE GHGCADGLFR KRLWGGTFGE LYKRPLCWVE HMSLDNETGL DPPGVRVRPV  180
SGLVAADYFA PGYFVWAGFN CKFGSHRVRD QTLSRIKSHI ELMVASNGGN KVVVIPHSMG  240
VLYFLHFMKW VEAPRPMGGG GGSDWCAKHI KALMNIGGPF LGVPKALAGI FSMEARDIAV  300
ARAFAPGVLD KDVFGLQTLQ HLMRMTRTWD ATMSMIPKGG DTIWGGLDWS PEGYCNYGAK  360
KVKNDDTNSE VETRVNYGRI VSFGKDVAEA DSSKIERIDF RDAVKGNYLA NATHCDVWTE  420
YHEMGVGGVK AVADYKVYTA GSVLDLFHFV APKLMARGDN HFSYGIADNL DDPKYEHYKY  480
WSNPLETKLP NAPDMEIYSM YGVGIPTERA YVYKLTPSAE CYIPFQIDNS AEGGSEDPCL  540
KGGIFSADGD ETVPVLSAGF MCAKGWRGKT RFNPAGIPTY IREYDHAPPA NLLEGRGTQS  600
GAHVDIMGNF ALIEDVLRVA AGATGQELGG DKVHSDIFKC LDGFNEARNG FKDRIPRHAG  660
LLPIQSPVSA CGALYWHLTN NQILAFYQDK DAWKTFALPH SVRNDKYWKY NPAACQVRLA  720
LVRKEDQEFM DVMGVSEDGK VVKLSPSSVS GFIPVLGEDE TYGKGADGKL KPVFLPSNQD  780
LMLNPSQVGY SNVVGCIPYP YVGPYFSGFA TAYGSQAMSH MLGIVPTRVP LPPDLAQDGP  840
IYVNAKQYRG ILRRRQSRAK LEAQNKLLKS RKPYLHESRH LHALNRVRGS GGRFLSTKRQ  900
SDQSASSSTH HVSDSISVHQ KDTGDTESHH LESSEFLRSV AIHSDMTSVS NTNDNFRQAD  960
RRFSGIPPHM SGAMEFHGGF MRAGNQHSAS VVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	6e-39	NF-YA family protein