PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027520.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 589aa MW: 66303.2 Da PI: 8.9869

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027520.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	401	445	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f++L++llP+ +K +Ka++L+ A eY+ sL PCP027520.1 401 HMISERKRREKLNESFHKLKSLLPPG-----TKKDKASVLTTAREYLTSL 445 8899******************97.....8*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
MTKRHKGRLK CSGEIQRDSH FPPLSMDTAF HLDEGSRANF LRLVMQSFGC FYICLWSYVP 60 PPSNCLFFLD GVYDEENQPS SSSGILARRL FDEYRLSVFK VLENECVPGF AFRNSFSFVE 120 LQEMDLQRLA SDDKQRQFYR EARIKTAVFM GCKSGEIELG LSNVSQINIK REMMRTWLPE 180 VFPGQLSPHT EVASRSINGQ QQYPASSSSS SLRSLSTMDS PEYSSLLFNI PTTTTTISHN 240 IPELFTQLSS NPLQPINTSS LEPLPTINVV TTTSSTGATS PHQQAIQAIS QIRNIQFPTP 300 EIEDATMTRA ILTVLSSSSY QPPPQTNPPS SSTTDRHLQT PKASAFKSYN TSALAPRTQM 360 GANLRLQNMH KRSISFLRRL NLMRLREGIQ ATRPTSSQLH HMISERKRRE KLNESFHKLK 420 SLLPPGTKKD KASVLTTARE YLTSLKAQVA ELSKRNQQLE ARLLPLTSLG ANEAAAAAGS 480 SNERVSLTVT RVSTESSPDQ DEQIIDLQVI LRSQESCTED MVIRILEFLK RVENVSLMSM 540 EANTWISESN SNINRVILRL RVDQGTEWNE AAFQEAVRRV VADLVRRID

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

MTKRHKGRLK CSGEIQRDSH FPPLSMDTAF HLDEGSRANF LRLVMQSFGC FYICLWSYVP  60
PPSNCLFFLD GVYDEENQPS SSSGILARRL FDEYRLSVFK VLENECVPGF AFRNSFSFVE  120
LQEMDLQRLA SDDKQRQFYR EARIKTAVFM GCKSGEIELG LSNVSQINIK REMMRTWLPE  180
VFPGQLSPHT EVASRSINGQ QQYPASSSSS SLRSLSTMDS PEYSSLLFNI PTTTTTISHN  240
IPELFTQLSS NPLQPINTSS LEPLPTINVV TTTSSTGATS PHQQAIQAIS QIRNIQFPTP  300
EIEDATMTRA ILTVLSSSSY QPPPQTNPPS SSTTDRHLQT PKASAFKSYN TSALAPRTQM  360
GANLRLQNMH KRSISFLRRL NLMRLREGIQ ATRPTSSQLH HMISERKRRE KLNESFHKLK  420
SLLPPGTKKD KASVLTTARE YLTSLKAQVA ELSKRNQQLE ARLLPLTSLG ANEAAAAAGS  480
SNERVSLTVT RVSTESSPDQ DEQIIDLQVI LRSQESCTED MVIRILEFLK RVENVSLMSM  540
EANTWISESN SNINRVILRL RVDQGTEWNE AAFQEAVRRV VADLVRRID

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	405	410	ERKRRE
2	406	411	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-56	bHLH family protein