PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027574.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 172aa    MW: 19911.8 Da    PI: 9.7618
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027574.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.44.4e-171769456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 + ++t++q++ Le+ F+ n+++  e++  LAk+l ++ rqV +W+qN+Ra++k
  PCP027574.1 17 KKRLTQDQVKLLERSFAFNKKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWK 69
                 5679************************************************9 PP
2HD-ZIP_I/II104.67.7e-3416107293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k+rl+++qvklLE+sF  ++kLeperK  la++L + prqva+W+qn+RAR+kt+ lE +y+a+++++++  +e++rLek+ve+Lr elk+
  PCP027574.1  16 NKKRLTQDQVKLLERSFAFNKKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWKTQSLELNYNAIQAKLESALAEKRRLEKDVERLRGELKR 107
                  79*************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MDFFQTSNHK NQFQHNKKRL TQDQVKLLER SFAFNKKLEP ERKLLLAKQL AIPPRQVAIW  60
YQNKRARWKT QSLELNYNAI QAKLESALAE KRRLEKDVER LRGELKRAHE VVLALNQQVQ  120
VFPPNPVICS VFDSSNCSDE GGVGSSSMQV QPHGDHEVKQ LEELYACLIG MQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-37HD-ZIP family protein