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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PCP027580.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 1393aa MW: 153870 Da PI: 6.8145 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 35.7 | 1.5e-11 | 811 | 857 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h e+E++RR+r+N++f Lr+++P+ K++ ++ L Av YI++L+
PCP027580.1 811 NHVEAEKQRRERLNHRFCVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 857
899***********************6.....5*****************95 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1393 aa Download sequence |
MATIIALDSM NLVHHFLVIV LLLIIPWAAP LSFDFPTFQQ SDLTNGTGLL ITEGDAVIAN 60 QSIHLTKEYV GGETTHGSVG RATYGEPFLL RDKDTRKLAD FNTSFTFRFD GKNSTVPPHD 120 QGLAFFLALN GSLLNRALRV GGNMGLPGNN SVENVTEPSN EYPFVAVEFV TFRNSRSTVE 180 DPDCGHVGIK INSSNNITKP WNSGIMEGEH NRAWIGYNSS SKNLSVSLTT YVNDAREQVI 240 ISLSSLVDLN KYLPDWVIVG FSSSTGTAPA LVDIMSWDFT STSLVGDGSL ALFSQEKKGQ 300 SLVPEPSPRT NNVKSRRRKK RMGVVISSAI GGFILACILG LGLYNSCKKR ATGGRADTDL 360 TIPNELGEEI SLKKFSHKEL ARATRNFFDG ELLGVGRYGA FYKGCIKEWN IHVAVKKMSR 420 SELVLKEIFV FTNLAHPVGP LCLSSLSSNL QEAQMASRKD QVVPAINAKN KYILAANGGT 480 LGVTTRKGNY LIKQLMRSLK GNVYDWYAQM NEAIARLTRI VEEKDLQIAT LVNRLETHHD 540 EKADHNLKVD QPKKETEEEE ELLPEKAKEK LKCTCDHLAS KISNQVNREF EALLHDDVMD 600 LDMRLVDHGD VTDSELFYFY AVSLTQSFSA SHGNNSDNIL GRAFGSGGFV WLAGDHEFQF 660 YECERVKEAR MHGIQTLVCI ATPCGVVELA SLDVIKEDYG LVHLSKSLFG SDGNNNNNRR 720 LSKQQTSREG NILDPILENE LFSADQIELT RQDAGGINEA APINVGGSSP ESPSNSVGNF 780 TSENTKNKTR SKNRGRSSNN GAASRQSQLS NHVEAEKQRR ERLNHRFCVL RSVVPNVSKM 840 DRSSLLADAV AYINQLKSKV EELDAKVQEQ PQKPKAGNNT TAASVVEVDV YVKVMGSEAK 900 IRVQSPDQDY PYAKLMNALK GLGLQVYHAS ISSVKELMIQ DVVARLPYGF TSEEVLRNGN 960 EVAAHKVVSW NFTSTALVDL DETDNTPLIP APSPGVQPKS GNANSGLLIG LGIVGSLILV 1020 GGLGLVWFIF CKKRKAVEER DENPFLNNLI DEEIEKGAGP RKFSYRELAQ ATSNFEEGKK 1080 LGEGGFGVVY KGFIKDLHSY VAVKKISSGS KQGLKEYASE VRIISRLRHR NLVQLIGWCH 1140 EESKLLLVYE FMSNGSLDSH LFKETSLLSW PARYKIVQGL ASGLFYLHEQ WEQCVLHRDI 1200 KSSNVMLDSN FNVKLGDFGL ARLVDHGKQS QTKVVAGTRG YMALEYITTG RASKESDVYS 1260 FGVVALEIAC GRKAIDLSLE SSQIEIVEWV WELYGEGKFI QAGDPKLNGH FDEEQMERLM 1320 IVGLWCAHPD FHFRPSVQQA IQVLNSEVAL PNLPSKMPVA TYFAPATSLS IFSTDTISSE 1380 RGQTNSQDIV KAL |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 316 | 321 | RRRKKR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G17880.1 | 1e-51 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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