PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027725.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 807aa MW: 89078 Da PI: 7.8407

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027725.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.9	1.9e-11	428	484	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g PCP027725.1 428 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 484 57*****************5444.2455536655.779999************98 PP
2	AP2	47.9	3.4e-15	527	578	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PCP027725.1 527 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFNTQEEAAEAYDIAAIKFRG 578 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MSFTQFDGSA AFSGGGFMPP QATHTGTDTT FSSTRNRDIQ TLLPLTVKQI TDACVSAVDK 60 SEFVIDSVDV NNVTLVGMVR EKIGRITDVA FFLDDGTGRM ECNKWFHEAK DANEMERILD 120 GMYVRIHGRL KSFQGKKTLN VFCIRPVSDY NEIASHFIEC IYVHLYNSRL RKPPADFGVT 180 AQPHMTFPTN QLSGQYSFDG QSSIEVKVLE ILSHPSYLLF FYLVGRKMAI LEGLWSGREE 240 GAHLEDIARQ LKIPVNDLMS LSLSLSLSPP DTHAHVHAHN YLHTKPISES YILWPSTATV 300 AGHHHQGASP TSATDLSIFS SGITGPKLED FLGGCTPATN TVTPTSLPRF STADHHHQTT 360 PLALSQNEIY DSELKTIAAS FLRGFSTTAT TTTTAATLQT TKLQNHHPLA SSDPTPKKPT 420 DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQGGYDKEEK AARAYDLAAL 480 KYWGPTTTTN FPVINYEKEL SEMKNMTRQE FVASLRRKSS GFSRGASIYR GVTRHHQHGR 540 WQARIGRVAG NKDLYLGTFN TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSIASSNL 600 PIGGMSGKSK NSSDSDSKSI EGNRSADDRD LSSASSVTFA SQQPSSSTLS FAIPLKQDPS 660 SDYWSNIFGY NPSQNNTKNP TTVSVAPSSS LFQSRAIGSY GNNSSPMPFN VDFSSTFSTS 720 ASETNNGYFG NFNIDGQRHQ EQLQHHQHEQ STITGTGSIP FATPIALNSN NGYETSSGYG 780 SWIAPSIHTF QTHAKTNLFQ TPIFGME

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MSFTQFDGSA AFSGGGFMPP QATHTGTDTT FSSTRNRDIQ TLLPLTVKQI TDACVSAVDK  60
SEFVIDSVDV NNVTLVGMVR EKIGRITDVA FFLDDGTGRM ECNKWFHEAK DANEMERILD  120
GMYVRIHGRL KSFQGKKTLN VFCIRPVSDY NEIASHFIEC IYVHLYNSRL RKPPADFGVT  180
AQPHMTFPTN QLSGQYSFDG QSSIEVKVLE ILSHPSYLLF FYLVGRKMAI LEGLWSGREE  240
GAHLEDIARQ LKIPVNDLMS LSLSLSLSPP DTHAHVHAHN YLHTKPISES YILWPSTATV  300
AGHHHQGASP TSATDLSIFS SGITGPKLED FLGGCTPATN TVTPTSLPRF STADHHHQTT  360
PLALSQNEIY DSELKTIAAS FLRGFSTTAT TTTTAATLQT TKLQNHHPLA SSDPTPKKPT  420
DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQGGYDKEEK AARAYDLAAL  480
KYWGPTTTTN FPVINYEKEL SEMKNMTRQE FVASLRRKSS GFSRGASIYR GVTRHHQHGR  540
WQARIGRVAG NKDLYLGTFN TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSIASSNL  600
PIGGMSGKSK NSSDSDSKSI EGNRSADDRD LSSASSVTFA SQQPSSSTLS FAIPLKQDPS  660
SDYWSNIFGY NPSQNNTKNP TTVSVAPSSS LFQSRAIGSY GNNSSPMPFN VDFSSTFSTS  720
ASETNNGYFG NFNIDGQRHQ EQLQHHQHEQ STITGTGSIP FATPIALNSN NGYETSSGYG  780
SWIAPSIHTF QTHAKTNLFQ TPIFGME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-134	AP2 family protein