PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027785.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 1068aa MW: 118621 Da PI: 7.0455

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027785.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.5	2e-26	941	990	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++isl+dl+kyF+lpi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl PCP027785.1 941 ASISLSDLAKYFDLPIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 990 78**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1068 aa Download sequence
MLGSGGVSDG YEVGSKRPRM MDPYFAVSSG ASGFQPYGYG GNFQPPVFPL ARLRGLPFNC 60 TDIDIFKFFA GLDIVDVLLV NKGGRFSGEA FVVFAGPMQV ELALQRDRQN MGRRYVEVFR 120 CKRQEYYKAV AAEMRGLPFS AKRSEIVEFF GEFKVVEDRV HIACRPDGKA TGEAYVEFVS 180 ADEAKKAMCK DKMTIGSSAM SDSSLYDPIE LETTTFDLIV VGTGLPATII AAAASASGKT 240 VLHLDRNHFY GSQFASLQLD ELTSFIKLHA TPPSTIVGTT STSSSLDYTA VDVTLRSVYS 300 NIETANYAPE ILANQFSKFL IDLGGPRVLF CADKAIDLIV KSGMGSYLSF KSIDVSFICD 360 ESGRLSSVPD SRSAIFKDKS LSLIEKNQLM RFFKLVQQHL AASAGDDGGN ENAKISEEDL 420 ESPFADFLKR MRLPPKIKSS ILYAISLADD DQDNSEVRKT VLKTREGMER LDLYQKSVGR 480 FPNVPGALLY PLYGHGEILQ GFTRRAAVKG CIQVLRMPVT ALLMDKQTGQ YKGVRLASGE 540 EICSHQLLLD PTLTVPLPPA SSSPNLEETL QVLSLKGDKR KVARGICITT SSLKPDVSNC 600 LLVYPPRFLF SEQDTSIRAI QIGGGSDKLA VCPSGMFVLY FSGLCDDAEH GKRLLHAAMN 660 ALLTLPVSAN REGGSAVQSE DADVKPTLLW STLYIQELTT AHNGECENIF FTPMPDGNLN 720 YNDLVDSTVA LFQKMYPDEV LFAETPSSPV EPDNLEDDTE LKLIRSLHVY GLDEGKRNEV 780 EREFVFRENG LYVELSAEPV LRLMKFPASQ VLQGHVNGCW VCILAFHENS PPDFTCIPSV 840 LSVSRNPKLK TIPRLSNDLQ MIFELSCKTD DKKSLQRSRE ETSQGSNDSN HKSRRWPILD 900 LDLNSLPSPV TMSESSEDQE SGRSSPGITE KKRRAPSGRI ASISLSDLAK YFDLPIVEAS 960 RNLNVGLTVL KKKCREFGIP RWPHRKIKSL DSLIRDLQEE TEIQQKENKA AALAVLKRQR 1020 MLERERESIE RRPFLEMKTE TKRFRQDVFK RRHRARALRS QGLSTSAN

Sequence ? help Back to Top

Protein Sequence Length: 1068 aa Download sequence

MLGSGGVSDG YEVGSKRPRM MDPYFAVSSG ASGFQPYGYG GNFQPPVFPL ARLRGLPFNC  60
TDIDIFKFFA GLDIVDVLLV NKGGRFSGEA FVVFAGPMQV ELALQRDRQN MGRRYVEVFR  120
CKRQEYYKAV AAEMRGLPFS AKRSEIVEFF GEFKVVEDRV HIACRPDGKA TGEAYVEFVS  180
ADEAKKAMCK DKMTIGSSAM SDSSLYDPIE LETTTFDLIV VGTGLPATII AAAASASGKT  240
VLHLDRNHFY GSQFASLQLD ELTSFIKLHA TPPSTIVGTT STSSSLDYTA VDVTLRSVYS  300
NIETANYAPE ILANQFSKFL IDLGGPRVLF CADKAIDLIV KSGMGSYLSF KSIDVSFICD  360
ESGRLSSVPD SRSAIFKDKS LSLIEKNQLM RFFKLVQQHL AASAGDDGGN ENAKISEEDL  420
ESPFADFLKR MRLPPKIKSS ILYAISLADD DQDNSEVRKT VLKTREGMER LDLYQKSVGR  480
FPNVPGALLY PLYGHGEILQ GFTRRAAVKG CIQVLRMPVT ALLMDKQTGQ YKGVRLASGE  540
EICSHQLLLD PTLTVPLPPA SSSPNLEETL QVLSLKGDKR KVARGICITT SSLKPDVSNC  600
LLVYPPRFLF SEQDTSIRAI QIGGGSDKLA VCPSGMFVLY FSGLCDDAEH GKRLLHAAMN  660
ALLTLPVSAN REGGSAVQSE DADVKPTLLW STLYIQELTT AHNGECENIF FTPMPDGNLN  720
YNDLVDSTVA LFQKMYPDEV LFAETPSSPV EPDNLEDDTE LKLIRSLHVY GLDEGKRNEV  780
EREFVFRENG LYVELSAEPV LRLMKFPASQ VLQGHVNGCW VCILAFHENS PPDFTCIPSV  840
LSVSRNPKLK TIPRLSNDLQ MIFELSCKTD DKKSLQRSRE ETSQGSNDSN HKSRRWPILD  900
LDLNSLPSPV TMSESSEDQE SGRSSPGITE KKRRAPSGRI ASISLSDLAK YFDLPIVEAS  960
RNLNVGLTVL KKKCREFGIP RWPHRKIKSL DSLIRDLQEE TEIQQKENKA AALAVLKRQR  1020
MLERERESIE RRPFLEMKTE TKRFRQDVFK RRHRARALRS QGLSTSAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	7e-74	Nin-like family protein