PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027870.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 1179aa MW: 130285 Da PI: 7.4778

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027870.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	114.8	4.6e-36	116	192	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++C +d++e+k yhrrh+vC ++++a +v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k PCP027870.1 116 RCQVPSCGVDIKELKGYHRRHRVCLACANAITVVIDGETKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNNRRRRKP 192 6***********************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 1179 aa Download sequence
MEIQPPLPSD DTSTVWDWGD LLDFTVDDDL SISWGSAENP DPEVGPAPER PPEDPNLNSS 60 RIRKRDPRLA CSNFLAGHIP CACPEVDARM MELEEEEAGH GKKRVKTGRA PTGTARCQVP 120 SCGVDIKELK GYHRRHRVCL ACANAITVVI DGETKRYCQQ CGKFHVLPDF DEGKRSCRRK 180 LERHNNRRRR KPSDYKGASG KESQKENQTE ETNFDGGATE DSLQLSSQLN EKEELLESEG 240 GRTLILCSVP ESQNVHSDSV VSVMASGETQ KDARKHDSNN SLSPPNCDNK SYSSMCPTGR 300 ISFKLYDWNP AEFPRRLRHQ IFQWLANMPV ELEGYIRPGC TILTVFIAMP KFMWMKLLED 360 PVSYIHEFVA VPGKMLSGRG NILIYLNDMI FRIVKDGTSV IKKKVEVRAP RLHYVHPTFF 420 EAGKPMEFVA CGSNLLQPKF RFLVSFSGKY LAYNYSPPSS HSQIEGDTAS NLDHQLCKIQ 480 VPQTDADCFG PAFIEIENES GLSNFIPVLI GDKEICAEMK TIQNRYEESF SSQGLHCSFS 540 GSLSNSCEAS SLRHTAFSEV ILDIAWLLKQ PSSENFQQIM TASQIQRFNY LFNFLISIKS 600 TTILDKVLQN LEILMAKMEL NSAINGSTDA DMRLLQNYMN YTRDLLCKKF ESSGRLVKKE 660 DLVSQSQTCF QNDGKLVAPF HCQDTEITVD GRLGVIVGST SDERSETVPL LSKKAVGKAN 720 LTKELPSVAK CYTSGEVLRS RSGGMFLRFR PTLLVISATA ICVGFCAVLI HPHKFSMFGS 780 ILTIGGMLGA VTSGRTADFL GRKGAMRMSA SFCITGWLAI YFSKGALSLD VGRFFTGFGI 840 GVFSYVVPIF IAEIAPKNLR GGLTTLNQLM IVTGSSVSFV IGTIISWETL ALTGIIPCIF 900 LLVGLCFVPE SPRWLAKIGR EKEFQVALQR LRGKDADISD EMDEIQEYIA TLQSLPKAQM 960 LDLFQSKYIR AVIIGVGLMV FQQFGGINGI GFYASQTFEE AGISSKIGTI AYACVPITVV 1020 GAALIDKSGR RPLIMVSATG TFLGCFLAGT SFFLKGNGLL LNWVPIIAVS GVLIYIASFS 1080 LGMGAVPWVI MSEVFPIHVK GAAGSLVVLV NWLGAWAVSY TYNFLMSWSS SRTYYIYAGF 1140 SLLTIIFVAK LVPETKGKTL EEIQACINSD KGGQDVVNR

Sequence ? help Back to Top

Protein Sequence Length: 1179 aa Download sequence

MEIQPPLPSD DTSTVWDWGD LLDFTVDDDL SISWGSAENP DPEVGPAPER PPEDPNLNSS  60
RIRKRDPRLA CSNFLAGHIP CACPEVDARM MELEEEEAGH GKKRVKTGRA PTGTARCQVP  120
SCGVDIKELK GYHRRHRVCL ACANAITVVI DGETKRYCQQ CGKFHVLPDF DEGKRSCRRK  180
LERHNNRRRR KPSDYKGASG KESQKENQTE ETNFDGGATE DSLQLSSQLN EKEELLESEG  240
GRTLILCSVP ESQNVHSDSV VSVMASGETQ KDARKHDSNN SLSPPNCDNK SYSSMCPTGR  300
ISFKLYDWNP AEFPRRLRHQ IFQWLANMPV ELEGYIRPGC TILTVFIAMP KFMWMKLLED  360
PVSYIHEFVA VPGKMLSGRG NILIYLNDMI FRIVKDGTSV IKKKVEVRAP RLHYVHPTFF  420
EAGKPMEFVA CGSNLLQPKF RFLVSFSGKY LAYNYSPPSS HSQIEGDTAS NLDHQLCKIQ  480
VPQTDADCFG PAFIEIENES GLSNFIPVLI GDKEICAEMK TIQNRYEESF SSQGLHCSFS  540
GSLSNSCEAS SLRHTAFSEV ILDIAWLLKQ PSSENFQQIM TASQIQRFNY LFNFLISIKS  600
TTILDKVLQN LEILMAKMEL NSAINGSTDA DMRLLQNYMN YTRDLLCKKF ESSGRLVKKE  660
DLVSQSQTCF QNDGKLVAPF HCQDTEITVD GRLGVIVGST SDERSETVPL LSKKAVGKAN  720
LTKELPSVAK CYTSGEVLRS RSGGMFLRFR PTLLVISATA ICVGFCAVLI HPHKFSMFGS  780
ILTIGGMLGA VTSGRTADFL GRKGAMRMSA SFCITGWLAI YFSKGALSLD VGRFFTGFGI  840
GVFSYVVPIF IAEIAPKNLR GGLTTLNQLM IVTGSSVSFV IGTIISWETL ALTGIIPCIF  900
LLVGLCFVPE SPRWLAKIGR EKEFQVALQR LRGKDADISD EMDEIQEYIA TLQSLPKAQM  960
LDLFQSKYIR AVIIGVGLMV FQQFGGINGI GFYASQTFEE AGISSKIGTI AYACVPITVV  1020
GAALIDKSGR RPLIMVSATG TFLGCFLAGT SFFLKGNGLL LNWVPIIAVS GVLIYIASFS  1080
LGMGAVPWVI MSEVFPIHVK GAAGSLVVLV NWLGAWAVSY TYNFLMSWSS SRTYYIYAGF  1140
SLLTIIFVAK LVPETKGKTL EEIQACINSD KGGQDVVNR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	190	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	0.0	SBP family protein