PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028057.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 563aa MW: 61242.4 Da PI: 5.7671

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028057.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23	1.7e-07	12	54	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++++++ l+C+ ++ lC C + H+ H+++ PCP028057.1 12 VSCDFCSDQPAVLYCRADSAKLCLFCDQLVHSAnllsrkHERS 54 67*****************************657777778765 PP
2	zf-B_box	21.5	4.8e-07	55	99	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+++ ++ ++ C +++ lC++C H + H+++pl PCP028057.1 55 LICDNCASEAVSVRCSTDNLVLCQECDWDAHGScsvsaaHDRTPL 99 69*************************999954888888888775 PP
3	CCT	63.4	6.7e-22	434	477	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktR++eK+irYesRKa+A++R+RvKGrFvk++ PCP028057.1 434 RGNAMLRYKEKKKTRRYEKHIRYESRKARADTRKRVKGRFVKAT 477 7789*************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MVSPKSGGVE GVSCDFCSDQ PAVLYCRADS AKLCLFCDQL VHSANLLSRK HERSLICDNC 60 ASEAVSVRCS TDNLVLCQEC DWDAHGSCSV SAAHDRTPLE GFSGCPSALE LASLLGLDLQ 120 DKTLPARPDL QSQNWDMGFP SMDSSWNGFG LQDLMVPNRN QNCVVYPTGE MKRQNSGGIG 180 GKQKHGIQKQ LLELFKRDLD GGGGGGSGSG GAENLVPGTP ARNGWQEENG SENMEGHASI 240 DVRNENGGVD GVVAPAAAPQ PVLQQQTPFT TLLMMPEENR DGDMLWDSNP HGHNTQIWDF 300 NLGRLRDHEE SGPLEVTYGS NDSGFMIKNF SELVKETSLT DTKMFRDMYQ VNCPIGHEDI 360 KFNLNFDGHH QGPATSASSN VPIGQPSSGS VFGEDKCSGS STDINFMEQS FVMKGDSLRT 420 VGTKADMELL AQNRGNAMLR YKEKKKTRRY EKHIRYESRK ARADTRKRVK GRFVKATTEA 480 PDGWLGFLLA VEVAIASVGC NSEALNVSQK RALALARQSM NRSSCNVNYS SGVTLIEKLI 540 EGRTSALEDH GFIASSSASR SDF

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MVSPKSGGVE GVSCDFCSDQ PAVLYCRADS AKLCLFCDQL VHSANLLSRK HERSLICDNC  60
ASEAVSVRCS TDNLVLCQEC DWDAHGSCSV SAAHDRTPLE GFSGCPSALE LASLLGLDLQ  120
DKTLPARPDL QSQNWDMGFP SMDSSWNGFG LQDLMVPNRN QNCVVYPTGE MKRQNSGGIG  180
GKQKHGIQKQ LLELFKRDLD GGGGGGSGSG GAENLVPGTP ARNGWQEENG SENMEGHASI  240
DVRNENGGVD GVVAPAAAPQ PVLQQQTPFT TLLMMPEENR DGDMLWDSNP HGHNTQIWDF  300
NLGRLRDHEE SGPLEVTYGS NDSGFMIKNF SELVKETSLT DTKMFRDMYQ VNCPIGHEDI  360
KFNLNFDGHH QGPATSASSN VPIGQPSSGS VFGEDKCSGS STDINFMEQS FVMKGDSLRT  420
VGTKADMELL AQNRGNAMLR YKEKKKTRRY EKHIRYESRK ARADTRKRVK GRFVKATTEA  480
PDGWLGFLLA VEVAIASVGC NSEALNVSQK RALALARQSM NRSSCNVNYS SGVTLIEKLI  540
EGRTSALEDH GFIASSSASR SDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	3e-78	CO-like family protein