PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028138.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 499aa MW: 54261.6 Da PI: 7.7334

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028138.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.4	1.6e-10	134	158	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G++CkF H+ PCP028138.1 134 GEKDCAHYMLTRTCKFGESCKFDHP 158 7889********************8 PP
2	zf-CCCH	26.4	1.2e-08	188	211	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++f +t Ck+G rCkF+H++ PCP028138.1 188 PDCPYFIKTQRCKFGMRCKFNHPK 211 78********************96 PP
3	zf-CCCH	36.8	6.4e-12	234	258	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G +CkF+H++ PCP028138.1 234 EPPCAFYLKTGQCKFGVTCKFHHPK 258 79*********************96 PP
4	zf-CCCH	38.4	2e-12	308	333	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ PCP028138.1 308 PGEPDCPFYLKTGSCKYGATCRYNHP 333 5789*********************9 PP
5	zf-CCCH	37.4	4.4e-12	391	413	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++++tG+Ck+G+ CkF+H+ PCP028138.1 391 IECDYYMKTGECKFGELCKFHHP 413 68********************8 PP
6	zf-CCCH	40.5	4.5e-13	446	471	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C ++++tGtCkyG++CkF H+p PCP028138.1 446 GVAICVYYLKTGTCKYGASCKFDHPP 471 5789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MSSHLYGFGA AAQSATSAAT AAALSSVYSS RALTDSYLSD PALRYYSGSD PFADHHTRAT 60 SMYLPPHLIP HSAWPAPDVE PGVPGVKRPS EALYHQSYMG AYNTIGQEAW YAALAKRPRY 120 EGASTLPIYP QRPGEKDCAH YMLTRTCKFG ESCKFDHPIW VPEGGIPDWK EVPLVAPTEV 180 LPERTGAPDC PYFIKTQRCK FGMRCKFNHP KDKVIASDAS ENADVFTLPE RPSEPPCAFY 240 LKTGQCKFGV TCKFHHPKDI QIPSANQENK AGETDTAIKT EGTGFSVKAP ISFTPALLYN 300 TKELPVRPGE PDCPFYLKTG SCKYGATCRY NHPDRYAINP PIAAISHPIV ATQAAGLNIG 360 VIDPAASIYQ TLAQPTVGVG PTVYPQRFGQ IECDYYMKTG ECKFGELCKF HHPIDRSVVA 420 LSTPKAVPVQ EANVKLTLAG LPRREGVAIC VYYLKTGTCK YGASCKFDHP PPGEVMGMGA 480 TQGTSGGEAK AGEFPQEQQ

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MSSHLYGFGA AAQSATSAAT AAALSSVYSS RALTDSYLSD PALRYYSGSD PFADHHTRAT  60
SMYLPPHLIP HSAWPAPDVE PGVPGVKRPS EALYHQSYMG AYNTIGQEAW YAALAKRPRY  120
EGASTLPIYP QRPGEKDCAH YMLTRTCKFG ESCKFDHPIW VPEGGIPDWK EVPLVAPTEV  180
LPERTGAPDC PYFIKTQRCK FGMRCKFNHP KDKVIASDAS ENADVFTLPE RPSEPPCAFY  240
LKTGQCKFGV TCKFHHPKDI QIPSANQENK AGETDTAIKT EGTGFSVKAP ISFTPALLYN  300
TKELPVRPGE PDCPFYLKTG SCKYGATCRY NHPDRYAINP PIAAISHPIV ATQAAGLNIG  360
VIDPAASIYQ TLAQPTVGVG PTVYPQRFGQ IECDYYMKTG ECKFGELCKF HHPIDRSVVA  420
LSTPKAVPVQ EANVKLTLAG LPRREGVAIC VYYLKTGTCK YGASCKFDHP PPGEVMGMGA  480
TQGTSGGEAK AGEFPQEQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein