PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028173.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 556aa MW: 61090.2 Da PI: 7.1355

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028173.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.2	2.2e-16	350	396	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq PCP028173.1 350 VHNLSERRRRDRINEKMRALQELIPQS-----NKTDKASMLDEAIEYLKSLQ 396 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MNSLNSCINF EADLPLTNPK KSMGPDHELV ELLWRDGQVV LNSQTHRKPS LNPNDQPRQV 60 QKHDQQSIRS GGSYGNSSNP ILDDDTVSLI HYPLENSFDK EFCSHFFSEL HSCGPIELDK 120 PIKQFEGEKF DASDTGRLVS NSPQPNVKSS AGVEYPANPM PPPRYHYINS TDQQNQNRGL 180 GKIVNFSQFA TPGKLSAGSS RGQFGGKEAG NLAQAEIREC SVMTVGSSYA GSNQVLNDLD 240 VSRASSNCDG TTGLSAGHFY DNVHKIMPQS ETGKTDTLDP TLTSSSGGSG SSFGRGGKQS 300 NVVNSNKRKV RDAEDSECQS EAAELESASA AGSKSAHRSG STRRSRAAEV HNLSERRRRD 360 RINEKMRALQ ELIPQSNKTD KASMLDEAIE YLKSLQMQLQ VMWMGSGMAP MMYPGVQHYI 420 SQMGMGSPAL PAMHNPVHLP RHPLVDQCMN VAPAANQTVM CQPPVLNPVD YHNQMQNPSF 480 QEQYARLMNF HHMQTMSQPM NMFRFGSQAV QQNQMMAPNG LSRPFGVGAA TNDPLSGKMI 540 QRLISVQECK NLTPDN

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MNSLNSCINF EADLPLTNPK KSMGPDHELV ELLWRDGQVV LNSQTHRKPS LNPNDQPRQV  60
QKHDQQSIRS GGSYGNSSNP ILDDDTVSLI HYPLENSFDK EFCSHFFSEL HSCGPIELDK  120
PIKQFEGEKF DASDTGRLVS NSPQPNVKSS AGVEYPANPM PPPRYHYINS TDQQNQNRGL  180
GKIVNFSQFA TPGKLSAGSS RGQFGGKEAG NLAQAEIREC SVMTVGSSYA GSNQVLNDLD  240
VSRASSNCDG TTGLSAGHFY DNVHKIMPQS ETGKTDTLDP TLTSSSGGSG SSFGRGGKQS  300
NVVNSNKRKV RDAEDSECQS EAAELESASA AGSKSAHRSG STRRSRAAEV HNLSERRRRD  360
RINEKMRALQ ELIPQSNKTD KASMLDEAIE YLKSLQMQLQ VMWMGSGMAP MMYPGVQHYI  420
SQMGMGSPAL PAMHNPVHLP RHPLVDQCMN VAPAANQTVM CQPPVLNPVD YHNQMQNPSF  480
QEQYARLMNF HHMQTMSQPM NMFRFGSQAV QQNQMMAPNG LSRPFGVGAA TNDPLSGKMI  540
QRLISVQECK NLTPDN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	355	360	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.4	2e-41	bHLH family protein