PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028501.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 416aa MW: 47389.6 Da PI: 6.5958

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028501.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.6	4.1e-52	16	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPt+eel+ +yLkkkv++++++l +vi+evd++k+ePwd++ k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s PCP028501.1 16 VPPGFRFHPTEEELLLYYLKKKVSNQRIDL-DVIREVDLNKLEPWDIQDKCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVICS- 111 69**************************.9***********954444122455********************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +g++ktLvfykgrap+g+k+dW+mheyrl PCP028501.1 112 NCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 144 8889*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MAPENMSISV NGQSQVPPGF RFHPTEEELL LYYLKKKVSN QRIDLDVIRE VDLNKLEPWD 60 IQDKCKIGTT PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIC SNCRRIGMRK 120 TLVFYKGRAP HGQKSDWIMH EYRLDDNNTS NCNITNVPTV VGDAAQEEGW VVCRIFKKKN 180 LHKILSSPVL STTTSITTET RSGQSLFDSC PEGALEQILQ YMGRTCKEEE NEAYINNNST 240 RFNLQPINTG ISNTSNHNGF HEKFLKLPTL DSPNSRSSQD CYQPNIHEGM MVTENNNNPV 300 SPFTDHHQNM DYHAHHMDSG ITNWAALDRL VASQLNGQTE TSRQLACFNI TDPYDNDDHD 360 HELQLPSTLR GPLSSSNTYH ATHDYNNREI DLWNFDRQSS PLSSSDTLCH LSTGPI

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MAPENMSISV NGQSQVPPGF RFHPTEEELL LYYLKKKVSN QRIDLDVIRE VDLNKLEPWD  60
IQDKCKIGTT PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIC SNCRRIGMRK  120
TLVFYKGRAP HGQKSDWIMH EYRLDDNNTS NCNITNVPTV VGDAAQEEGW VVCRIFKKKN  180
LHKILSSPVL STTTSITTET RSGQSLFDSC PEGALEQILQ YMGRTCKEEE NEAYINNNST  240
RFNLQPINTG ISNTSNHNGF HEKFLKLPTL DSPNSRSSQD CYQPNIHEGM MVTENNNNPV  300
SPFTDHHQNM DYHAHHMDSG ITNWAALDRL VASQLNGQTE TSRQLACFNI TDPYDNDDHD  360
HELQLPSTLR GPLSSSNTYH ATHDYNNREI DLWNFDRQSS PLSSSDTLCH LSTGPI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-114	NAC family protein