PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028635.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 323aa MW: 35965.3 Da PI: 7.6948

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028635.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.9	2.3e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +++++G g+W++ +++ g++R++k+c++rw++yl PCP028635.1 15 RGPWTPEEDRKLLAYIQLYGHGSWRSLPQKAGLKRCGKSCRLRWRNYL 62 89*********************************************7 PP
2	Myb_DNA-binding	52.7	9.8e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ Ed+ +++++++lG++ W++Ia++++ +Rt++++k++w+++l PCP028635.1 68 RGNFSLHEDQTIIQLHALLGNR-WSAIAAHLP-RRTDNEVKNYWNSHL 113 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MGKSSCYAAA SGIKRGPWTP EEDRKLLAYI QLYGHGSWRS LPQKAGLKRC GKSCRLRWRN 60 YLRPDIKRGN FSLHEDQTII QLHALLGNRW SAIAAHLPRR TDNEVKNYWN SHLKKRLAKI 120 GFDPVTHKPK AAILGSANGD PKNWSNLSHI AQWESARLQA EARSVKESKL RMHESAPAPS 180 LSDDHHQFAP PLVPQCLDIL RASAWESLIS MSRSSSRSAA QTNMNGQGNV SFGDHHHVHD 240 HGINMNAQDY GSNFEAPTSD QQLSSLMGYD DATLMSSVAT GSMDINELFG EYCGDECSEL 300 LAALPHDTGF EFGDAWTSLE QLM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	5e-89	MYB family protein