PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028830.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CAMTA

Protein Properties

Length: 1261aa MW: 142231 Da PI: 6.2929

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028830.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	172.4	6.5e-54	280	395	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e k+rwl++ ei++iL n++++elt++++ rp+ gsl L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++fqrr+y PCP028830.1 280 QEaKNRWLRPAEICEILRNYRHFELTTDPPVRPPAGSLYLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNANFQRRSY 377 5559******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylev 117 w+L+++l++ivlvhy++v PCP028830.1 378 WMLDTHLQHIVLVHYRNV 395 **************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1261 aa Download sequence
MGTTTTTQAY GEPWYWDNRY ANESGPFDWY QKYQSLAPLI NLYVPRHPNQ RNRILVVGCG 60 NSAFSEGMAD DGYEEVVSID ISSVVIQAMQ SKYSNRPHLK YLQMDVRDMS AFETASFDAV 120 VDKGTLDSLL CGSNSRQNST EMLEEVWRVL KDKGVYILIT YGAPLYRLRL LRESCSWMIK 180 LHVIEKLSCE DKSEPPIWDL TNPVPLNDDG SSTEELLGNN PDVHYIYVCT KALSMNCQSI 240 EEDENLQPLE FSVTRSGGID SDLLVWFFTL RLFDLAQILQ EAKNRWLRPA EICEILRNYR 300 HFELTTDPPV RPPAGSLYLF DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH 360 CYYAHGEDNA NFQRRSYWML DTHLQHIVLV HYRNVEEANS AARMVQTSFG SSPLQTSFAS 420 SPVHTSFASS PNRVDLGGQT EFEDVDSRRD AGTSSVEQPM FGSFFHNASL LPQQVGGFPE 480 SFRDPSSTWY GGPKFDHGAG LSAWQGMDSS TRNEHIMHGQ NLFVEEPNRA DFITLKLTDA 540 KVDARSGVKD VTCEDRLTTN IDVQIVSAPS QREDQVPKEH DFNVLHPEVQ DYSDPQIVIT 600 PSNQVEENRD GGVRNEPVEL KKLDSFGRWM DKEIGVDCDD SLMASDSGNY WSTFDAESGD 660 KEVSSLSHHM QLDIESLGPS LSQEQLFTIS DFSPDWAYSG TETKVLIVGS FLGSKKDCAD 720 TNWGCMFGEI EVSAEILSNN AIRCQTPLHA PGRVPFYVTG RNRLACSEIR EFEYREKPIG 780 IAINRLRDDE LRFQIRLAKL LSLGSERKWL ICAVPDCDKC KLKSSIFSMR SNSESDWVTI 840 DGASVACESD HLSRRDVLIQ NLLKDRLCEW LVCKIHEGGK GLHVLDNEGQ GVLHLTGALG 900 YEWAIGPIIA AGVNPNFRDA HGRTGLHWAS YFGREETVIA LLRLGAAPGA VEDPTSVFPG 960 GQTAADLASS RGHKGIAGYL AEADLTSHLE LLTMNENIMN NATATIAAEK AKQTAEVAAS 1020 DVAVDEQHFL KNPIAAVRKS AHAAALIQES FRARSFRQRQ LTKSRADISE VQSQDLVARR 1080 SLKRVQKFAH YEDYLHVAAA LKIQQNYRGW KGRKDYLKIR DRIVKIQAHV RGHQVRKNYK 1140 KVLWSVGILE KVILRWRRKG TGLRGFRVEK PTEDASSEVK KNDDYEFLSV GRKQKFAGVE 1200 KALARVRSMA RQPEAREQYM RLLSNFEKLE IADGENQASN QNESSDEKVI DEVLRALNEG 1260 Q

Sequence ? help Back to Top

Protein Sequence Length: 1261 aa Download sequence

MGTTTTTQAY GEPWYWDNRY ANESGPFDWY QKYQSLAPLI NLYVPRHPNQ RNRILVVGCG  60
NSAFSEGMAD DGYEEVVSID ISSVVIQAMQ SKYSNRPHLK YLQMDVRDMS AFETASFDAV  120
VDKGTLDSLL CGSNSRQNST EMLEEVWRVL KDKGVYILIT YGAPLYRLRL LRESCSWMIK  180
LHVIEKLSCE DKSEPPIWDL TNPVPLNDDG SSTEELLGNN PDVHYIYVCT KALSMNCQSI  240
EEDENLQPLE FSVTRSGGID SDLLVWFFTL RLFDLAQILQ EAKNRWLRPA EICEILRNYR  300
HFELTTDPPV RPPAGSLYLF DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH  360
CYYAHGEDNA NFQRRSYWML DTHLQHIVLV HYRNVEEANS AARMVQTSFG SSPLQTSFAS  420
SPVHTSFASS PNRVDLGGQT EFEDVDSRRD AGTSSVEQPM FGSFFHNASL LPQQVGGFPE  480
SFRDPSSTWY GGPKFDHGAG LSAWQGMDSS TRNEHIMHGQ NLFVEEPNRA DFITLKLTDA  540
KVDARSGVKD VTCEDRLTTN IDVQIVSAPS QREDQVPKEH DFNVLHPEVQ DYSDPQIVIT  600
PSNQVEENRD GGVRNEPVEL KKLDSFGRWM DKEIGVDCDD SLMASDSGNY WSTFDAESGD  660
KEVSSLSHHM QLDIESLGPS LSQEQLFTIS DFSPDWAYSG TETKVLIVGS FLGSKKDCAD  720
TNWGCMFGEI EVSAEILSNN AIRCQTPLHA PGRVPFYVTG RNRLACSEIR EFEYREKPIG  780
IAINRLRDDE LRFQIRLAKL LSLGSERKWL ICAVPDCDKC KLKSSIFSMR SNSESDWVTI  840
DGASVACESD HLSRRDVLIQ NLLKDRLCEW LVCKIHEGGK GLHVLDNEGQ GVLHLTGALG  900
YEWAIGPIIA AGVNPNFRDA HGRTGLHWAS YFGREETVIA LLRLGAAPGA VEDPTSVFPG  960
GQTAADLASS RGHKGIAGYL AEADLTSHLE LLTMNENIMN NATATIAAEK AKQTAEVAAS  1020
DVAVDEQHFL KNPIAAVRKS AHAAALIQES FRARSFRQRQ LTKSRADISE VQSQDLVARR  1080
SLKRVQKFAH YEDYLHVAAA LKIQQNYRGW KGRKDYLKIR DRIVKIQAHV RGHQVRKNYK  1140
KVLWSVGILE KVILRWRRKG TGLRGFRVEK PTEDASSEVK KNDDYEFLSV GRKQKFAGVE  1200
KALARVRSMA RQPEAREQYM RLLSNFEKLE IADGENQASN QNESSDEKVI DEVLRALNEG  1260
Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.2	0.0	CAMTA family protein