PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP028979.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26329.2 Da    PI: 9.5105
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP028979.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.3e-212162445
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     n qvtfskRr g++KKA+EL++LC++e+a+i+fs+ +k
  PCP028979.1 21 PKRNNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPANK 62
                 566789*********************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MVMKIKKPSQ GRQKIAIAKI PKRNNLQVTF SKRRSGLFKK ASELCTLCGV EIAIIVFSPA  60
NKPFSFGHPE VDSIVDRFLA RNPYPNFQAG STGSTQQLVE VHRNASVHEL NMQLTQVVNQ  120
LEAEKKCGEA FDKISKASEK QCWWERPVEE LGFHELQILK ASLEELKKNM TKQANGILME  180
SSAAAVANCS SSSSPFFMMN INGVVQGDDL RCFESKIKPT NQHGSAYSFG YAGHGLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-57M-type_MADS family protein