PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP029316.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 288aa    MW: 32643.2 Da    PI: 6.4419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP029316.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-091864347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+eE + +  a +++  +   +W+++a++++ g+t+ +++  +q++
      PCP029316.1 18 EWTKEENKMFESALAMFDEKtpdRWRKVAEMIP-GKTEIDVIKQYQDL 64
                     6********************************.***********986 PP
2Myb_DNA-binding41.82.5e-13121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r    ++t+ q+ s+ qky
      PCP029316.1 121 PWTPEEHRRFLLGLLKHGKGDWRNISRNYVVTKTPTQVASHAQKY 165
                      7*****************************9*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
METLYPASNM ADYDWYSEWT KEENKMFESA LAMFDEKTPD RWRKVAEMIP GKTEIDVIKQ  60
YQDLEEDVCE IESGRFPIPP GYPQSYFTLE LGDDRDFDAN RKRPAAAAAR GSDQERKKGI  120
PWTPEEHRRF LLGLLKHGKG DWRNISRNYV VTKTPTQVAS HAQKYFMRQH SGGKDKRRPS  180
IHDITTVNLT SNTPPETNGS PSDQSPPEQK STESPNVLLD WNAADDGGAA VVFGSTHGNL  240
IDPSPYEVPA DGIKMQLQKL YSHAHYAAHA TPQNSLYLRQ SARHQIHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.13e-82MYB family protein