PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP029520.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 334aa    MW: 37631.5 Da    PI: 8.7305
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP029520.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.42.3e-3965141278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  C v+gC+adls+++eyhrrh+vCe hsk+pvv+v+g+++rfCqqCsr h+l efDe+k+sCr+rL++hn+rrrk+++
  PCP029520.1  65 CLVDGCRADLSRCREYHRRHRVCELHSKTPVVVVKGEQKRFCQQCSRVHSLVEFDEGKKSCRKRLNGHNQRRRKPKP 141
                  **************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MEWDFKDSDL DALVGSSISQ PQMKNRPAES LGLDFKKLQE DPIKLSSSRR INGSNNGSDH  60
LKVLCLVDGC RADLSRCREY HRRHRVCELH SKTPVVVVKG EQKRFCQQCS RVHSLVEFDE  120
GKKSCRKRLN GHNQRRRKPK PESFYFSSHD FFSTYKGPRI LQFSNPQVCA TTNVRCMWPV  180
EDKRGAESMC SNHHHQWLRA TDEPKPPNSF NGAGHEPFLF LQASDPKATA GNRAAPQAFM  240
CQQQPLPITA AASPKSTRGC ALYLLSSHPT QNPVTGLNHL AQSPVTTTHP GQILDARLQM  300
NRGFSEFSCS HDEEDRTVIP EMMFLPGPDG FSNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-43SBP family protein