PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP029532.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 350aa MW: 39555.4 Da PI: 6.3909

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP029532.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	1e-17	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l ++++ +G g+W++ ar g++Rt+k+c++rw++yl PCP029532.1 42 RGPWTVEEDLALMNYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 89 89********************************************97 PP
2	Myb_DNA-binding	51.1	3.1e-16	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ PCP029532.1 95 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 138 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MDMAKGSRGC KFSSSQLSAE TLNETGSHDH EEAEDQMMDL RRGPWTVEED LALMNYIANH 60 GEGRWNSLAR SAGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQLLILELH SRWGNRWSKI 120 AQHLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSKQFKDTM RYLWMPRLVE RIQAAAAAST 180 TTNATATDSS IAAPATSHHF SNNFQSSAQM LLQPSHHHHF GVSSQSQLTP SYNTPENSST 240 AASSDSFGTQ VSPVSDLTDY YTPTAAAAAI SVNNNPTPDN SYFVQDNHQV GNYDNYSGSF 300 GNQGLVLEHF QTMDEQNNNY QWGTVEGGDI SDNWWNVEDM WFLQQQLSSI

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MDMAKGSRGC KFSSSQLSAE TLNETGSHDH EEAEDQMMDL RRGPWTVEED LALMNYIANH  60
GEGRWNSLAR SAGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQLLILELH SRWGNRWSKI  120
AQHLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSKQFKDTM RYLWMPRLVE RIQAAAAAST  180
TTNATATDSS IAAPATSHHF SNNFQSSAQM LLQPSHHHHF GVSSQSQLTP SYNTPENSST  240
AASSDSFGTQ VSPVSDLTDY YTPTAAAAAI SVNNNPTPDN SYFVQDNHQV GNYDNYSGSF  300
GNQGLVLEHF QTMDEQNNNY QWGTVEGGDI SDNWWNVEDM WFLQQQLSSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06490.1	3e-93	MYB family protein