PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP029570.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 653aa MW: 73163.9 Da PI: 6.1804

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP029570.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47	4.7e-15	454	501	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h ErrRR+++N++f L++++P+ K +K++iL A+eY+k+Lq PCP029570.1 454 TNHALSERRRREKLNERFCILKSMVPSV-----SKEDKVSILDDAIEYLKDLQ 501 58999********************6.....49***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
MRLHGAAAAA AAAAAPAPTS YCWSSEFSGK FFDKRVETKI WVLLLGSKDS KFKALDMAVP 60 ENLRKQLALA VRSIQWSYGI FWSISARQPG VLEWGDGYYN GDIKTRKTVQ AIELNADQMG 120 LQRSEQLREL YESLSAGEAS PQARRPSASL SPEDLADTEW YYLVCMSFVF NIGQGLLYAF 180 PFLGGVIEIG VTELVLEDPS IIQHVKTSFL EAPYPILASK RTNPSAASTR NDNDLACAML 240 DDDVVDTKFI PVVGCPEMDV TSPDDSSNCL GRPNQPVDDS FIIEGMNRGA SQVQSWQFMD 300 EEISNFVHHS MDSSDCISQT LVYPEKVLFG PKTEKVNDHC PQELKECDNT KMTSSDPQGN 360 DLQYQSVLSA LLKSSHQLVL GPHFRNSHQE SSFTSWKRGW FVKCRTQRGG TPQKLLKKIL 420 FEVPQMHVDC VLVSPVDKSN ANGVWRPEPD EIGTNHALSE RRRREKLNER FCILKSMVPS 480 VSKEDKVSIL DDAIEYLKDL QKRVEELESL REPTDSEAKI KRKLQDTVER TSDNRCNTKI 540 SNGKKPIVYK RKASDMDETE PEINHIVSKN GSSDNITVNM TNKDVLIEMK CPWREGVLLE 600 IMDITSRLHL DTHSVESSTV DGILSLTIKS RFRGTSIAST GTIKQALHRI ARS

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

MRLHGAAAAA AAAAAPAPTS YCWSSEFSGK FFDKRVETKI WVLLLGSKDS KFKALDMAVP  60
ENLRKQLALA VRSIQWSYGI FWSISARQPG VLEWGDGYYN GDIKTRKTVQ AIELNADQMG  120
LQRSEQLREL YESLSAGEAS PQARRPSASL SPEDLADTEW YYLVCMSFVF NIGQGLLYAF  180
PFLGGVIEIG VTELVLEDPS IIQHVKTSFL EAPYPILASK RTNPSAASTR NDNDLACAML  240
DDDVVDTKFI PVVGCPEMDV TSPDDSSNCL GRPNQPVDDS FIIEGMNRGA SQVQSWQFMD  300
EEISNFVHHS MDSSDCISQT LVYPEKVLFG PKTEKVNDHC PQELKECDNT KMTSSDPQGN  360
DLQYQSVLSA LLKSSHQLVL GPHFRNSHQE SSFTSWKRGW FVKCRTQRGG TPQKLLKKIL  420
FEVPQMHVDC VLVSPVDKSN ANGVWRPEPD EIGTNHALSE RRRREKLNER FCILKSMVPS  480
VSKEDKVSIL DDAIEYLKDL QKRVEELESL REPTDSEAKI KRKLQDTVER TSDNRCNTKI  540
SNGKKPIVYK RKASDMDETE PEINHIVSKN GSSDNITVNM TNKDVLIEMK CPWREGVLLE  600
IMDITSRLHL DTHSVESSTV DGILSLTIKS RFRGTSIAST GTIKQALHRI ARS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	460	465	ERRRRE
2	461	466	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein