PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP029773.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 293aa MW: 31696.8 Da PI: 7.5598

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP029773.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.6	1.8e-42	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp ++p+kf vhk+FGasnv k+l++l+ ++r+da++sl+yeAear+rdPvyG+vg+i+ lqq+l++++a+l +k PCP029773.1 8 PCAACKFLRRKCTQECVFAPYFPPDNPHKFSKVHKVFGASNVAKILNELSASQRDDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKEVQADLFNAK 105 7********************************************************************************************98888 PP DUF260 99 ee 100 +e PCP029773.1 106 KE 107 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MSSSSNSPCA ACKFLRRKCT QECVFAPYFP PDNPHKFSKV HKVFGASNVA KILNELSASQ 60 RDDAVNSLAY EAEARLRDPV YGCVGLISIL QQRLKEVQAD LFNAKKELAT YMGPQAMLSI 120 LQPPTYMAQQ LQGNAFSAVS PYMSPMIGIP TGAASGQLMI REPQQQQIFE AQQLAVAVAA 180 REQQAQEHVR FNSGFDSSPG SVTVGGFTQM AGALGNAVSP SLALGFDSGP YHQIQQQQPH 240 HNPHLHLQLQ SQLLLQTQQP QGQHQAQLSQ QPQLQAKSDP GEEGGGRSVG PSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-75	LBD family protein