PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP029880.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family YABBY
Protein Properties Length: 196aa    MW: 22074.1 Da    PI: 8.521
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP029880.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY184.94.2e-57915923170
        YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaae.shldeslkee..lleelkveeenl.ksnvekeesastsvsseklsenedeevprvppvi 116
                  avsvP tslfk+vtvrCGhCt+ll vn++      + + +hl++s+  +    ++l  e  n+ + n  +++++ ++ ++   +   de +pr+p ++
  PCP029880.1   9 AVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQfHHLGHSFFSSpnNSHNLLEEIPNVpTPNFLMNQTSVNDFAARP-TGGPDELLPRPPVIN 105
                  79***********************888777655554425677776555333333333333331334444444444444433.67788999**999** PP

        YABBY 117 rPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+ihfgl
  PCP029880.1 106 RPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGL 159
                  ****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MEAEREAEAV SVPCTSLFKT VTVRCGHCTN LLPVNMRGLL LPSPNQFHHL GHSFFSSPNN  60
SHNLLEEIPN VPTPNFLMNQ TSVNDFAARP TGGPDELLPR PPVINRPPEK RQRVPSAYNR  120
FIKDEIQRIK SVNPDISHRE AFSAAAKNWA HFPHIHFGLM PDQTVKKTTV RQQEGEDVVM  180
KDGFFSSANN VRVLPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.15e-68YABBY family protein