PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030071.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 248aa MW: 26970.2 Da PI: 6.78

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030071.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.6	3.4e-41	8	106	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++rrkC+++Cv+apyfp +qp+kfanvh ++Gasnv k+l++l+ reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l +k PCP030071.1 8 PCAACKFQRRKCTQECVFAPYFPPDQPQKFANVHTVYGASNVGKILNELNVAYREDAVTSLAYEAEARLRDPVYGCVGFISFLQNRLKQVQTDLYNAK 105 7********************************************************************************************98887 PP DUF260 99 e 99 + PCP030071.1 106 K 106 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MSSNTHSPCA ACKFQRRKCT QECVFAPYFP PDQPQKFANV HTVYGASNVG KILNELNVAY 60 REDAVTSLAY EAEARLRDPV YGCVGFISFL QNRLKQVQTD LYNAKKDLSA YIGPQALLIP 120 LLGATTGPPP QQGCRVGQLL IRDQHQQQLF EAHQQELVRF NINGMDAAAS LVNGNGFNQI 180 PAAAASNGVV SGSLGLGGAF DNNHYNQIEQ QAAAHHQNSL DHQLQAQLML QPHPAALESQ 240 QKSDGEGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-61	LBD family protein